View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15933_low_6 (Length: 396)
Name: NF15933_low_6
Description: NF15933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15933_low_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 42009320 - 42009722
Alignment:
| Q |
14 |
tactgttcctgaaattgcattgccactttgaggtcagaagtaactccagcacatcagtcatgtttttagtccattcgtattgttgtctaacgttattgat |
113 |
Q |
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| T |
42009320 |
tactgttcctgaaattgcattggcactttgaggtcagaagtaactccagcacatcagtcatgtttttagtccatttgtattgttgtctaacgttattggt |
42009419 |
T |
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| Q |
114 |
caattattgtaccagattaattgccagccaagtacgctagctctttccatctattttctcaattgacttttgttgacaaatatacatttaaattttgact |
213 |
Q |
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| T |
42009420 |
caattattgtaccagattaattgccagccaagtacgctagctctttccatctattttctcaattgacttttgttgacaaatatacatttaaattttgact |
42009519 |
T |
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| Q |
214 |
tgaagagttctacttccatttctactcca-----------------tcatactacaacaacca---acaaacccctcttcactcctttttgcatttcatc |
293 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42009520 |
tgaagagttctacttccatttctactccatcatatcatatattctttcatactacaacaaccaactacaaacccctcttcactcctttttgcatttcatc |
42009619 |
T |
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| Q |
294 |
atcaatttacacttttcactcttccctttagttcccatccctctttcaaacaaattctttaattaatggcttccataactctaatacttgtatttcatgt |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009620 |
atcaatttacacttttcactcttccctttagttcccatccctctctcaaacaaattctttaattaatggcttccataactctaatacttgtatttcatgt |
42009719 |
T |
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| Q |
394 |
ctt |
396 |
Q |
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| T |
42009720 |
ctt |
42009722 |
T |
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