View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15933_low_7 (Length: 385)

Name: NF15933_low_7
Description: NF15933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15933_low_7
NF15933_low_7
[»] chr2 (5 HSPs)
chr2 (73-379)||(45418151-45418458)
chr2 (14-56)||(45418086-45418128)
chr2 (272-312)||(37716151-37716191)
chr2 (280-308)||(629598-629626)
chr2 (225-253)||(34423868-34423896)
[»] chr3 (1 HSPs)
chr3 (269-319)||(51940358-51940408)
[»] chr8 (2 HSPs)
chr8 (272-308)||(40155079-40155115)
chr8 (273-310)||(16936351-16936388)
[»] chr1 (3 HSPs)
chr1 (277-308)||(48995497-48995528)
chr1 (273-319)||(42561020-42561066)
chr1 (268-304)||(11463125-11463161)
[»] chr7 (2 HSPs)
chr7 (225-255)||(14625124-14625154)
chr7 (271-308)||(42040918-42040955)
[»] chr5 (2 HSPs)
chr5 (271-325)||(13877014-13877068)
chr5 (225-255)||(17704328-17704358)
[»] chr6 (1 HSPs)
chr6 (268-309)||(6040640-6040681)
[»] chr4 (1 HSPs)
chr4 (274-319)||(27746744-27746789)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 73 - 379
Target Start/End: Original strand, 45418151 - 45418458
Alignment:
Q  73 gaacagcttccctgtaaaacatatgtacgtgttgtgtttggtcatataaatattgattggagtggatgagtgctacttagttgatgttcctctagtccaa 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  45418151 gaacagcttccctgtaaaacatatgtacgtgttgtgtttggtcatataaatattgatcggagtggatgagtgctacttagttgatgttcctctagtccta 45418250  T
Q  173 tagctggtattttgcaaattaacaaactattttacctacaatat-nnnnnnntattcttatcttttttaataacatcaataatagaatannnnnnnaaaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| ||||       ||||    
T  45418251 tagctggtattttgcaaattaacaaactattttacctacaatataaaaaaaatattcttatcttttttaataacatcaataatataatattttttaaaaa 45418350  T
Q  272 caaatttatttaagggtataactggaataatgaaaaatctaacccaaacaaatttatagatttgataaaattacatctacagtccttgaattttgacaat 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45418351 caaatttatttaagggtataactggaataatgaaaaatctaacccaaacaaatttatagatttgataaaattacatctacggtccttgaattttgacaat 45418450  T
Q  372 tttcttcg 379  Q
    ||| ||||    
T  45418451 tttattcg 45418458  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 45418086 - 45418128
Alignment:
Q  14 aaatgtaacataaataattattatatgaggtcacgctttaagg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45418086 aaatgtaacataaataattattatatgaggtcacgctttaagg 45418128  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 37716151 - 37716191
Alignment:
Q  272 caaatttatttaagggtataactggaataatgaaaaatcta 312  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  37716151 caaatttatttaagggtataactggaataatgaaaagtcta 37716191  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 629626 - 629598
Alignment:
Q  280 tttaagggtataactggaataatgaaaaa 308  Q
    |||||||||||||||||||||||||||||    
T  629626 tttaagggtataactggaataatgaaaaa 629598  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 253
Target Start/End: Complemental strand, 34423896 - 34423868
Alignment:
Q  225 attcttatcttttttaataacatcaataa 253  Q
    |||||||||||||||||||||||||||||    
T  34423896 attcttatcttttttaataacatcaataa 34423868  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 51940408 - 51940358
Alignment:
Q  269 aaacaaatttatttaagggtataactggaataatgaaaaatctaacccaaa 319  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  51940408 aaacaaatttatttaagggtataattggaataatgaaaaatccaacccaaa 51940358  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 308
Target Start/End: Original strand, 40155079 - 40155115
Alignment:
Q  272 caaatttatttaagggtataactggaataatgaaaaa 308  Q
    ||||||||||||||||||||||| |||||||||||||    
T  40155079 caaatttatttaagggtataactagaataatgaaaaa 40155115  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 16936388 - 16936351
Alignment:
Q  273 aaatttatttaagggtataactggaataatgaaaaatc 310  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  16936388 aaatttatttaagggtataattggaataataaaaaatc 16936351  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 308
Target Start/End: Original strand, 48995497 - 48995528
Alignment:
Q  277 ttatttaagggtataactggaataatgaaaaa 308  Q
    ||||||||||||||||||||||||||||||||    
T  48995497 ttatttaagggtataactggaataatgaaaaa 48995528  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 319
Target Start/End: Original strand, 42561020 - 42561066
Alignment:
Q  273 aaatttatttaagggtataactggaataatgaaaaatctaacccaaa 319  Q
    |||||| ||||||||||||| ||||||||||||||||| || |||||    
T  42561020 aaatttgtttaagggtataattggaataatgaaaaatccaatccaaa 42561066  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 11463125 - 11463161
Alignment:
Q  268 aaaacaaatttatttaagggtataactggaataatga 304  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  11463125 aaaacaaatttgtttaaaggtataactggaataatga 11463161  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 14625124 - 14625154
Alignment:
Q  225 attcttatcttttttaataacatcaataata 255  Q
    |||||||||||||||||||||||||||||||    
T  14625124 attcttatcttttttaataacatcaataata 14625154  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 42040955 - 42040918
Alignment:
Q  271 acaaatttatttaagggtataactggaataatgaaaaa 308  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  42040955 acaagtttgtttaagggtataactggaataatgaaaaa 42040918  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 325
Target Start/End: Complemental strand, 13877068 - 13877014
Alignment:
Q  271 acaaatttatttaagggtataactggaataatgaaaaatctaacccaaacaaatt 325  Q
    ||||||||||||||   |||||||| |||||||||||||| |||||||| |||||    
T  13877068 acaaatttatttaaaactataactgaaataatgaaaaatccaacccaaaaaaatt 13877014  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 255
Target Start/End: Complemental strand, 17704358 - 17704328
Alignment:
Q  225 attcttatcttttttaataacatcaataata 255  Q
    |||||||||||||||||||||||||||||||    
T  17704358 attcttatcttttttaataacatcaataata 17704328  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Complemental strand, 6040681 - 6040640
Alignment:
Q  268 aaaacaaatttatttaagggtataactggaataatgaaaaat 309  Q
    ||||||||||| |||||||||||||||  |||||||||||||    
T  6040681 aaaacaaatttgtttaagggtataacttaaataatgaaaaat 6040640  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 27746744 - 27746789
Alignment:
Q  274 aatttatttaagggtataactggaataatgaaaaatctaacccaaa 319  Q
    ||||| ||||||||||||||||||| ||||||||| | ||||||||    
T  27746744 aatttgtttaagggtataactggaagaatgaaaaacccaacccaaa 27746789  T

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