View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15933_low_8 (Length: 380)
Name: NF15933_low_8
Description: NF15933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15933_low_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 210 - 380
Target Start/End: Complemental strand, 11202649 - 11202479
Alignment:
| Q |
210 |
cacaacataacataacacaggcaattaatgaataatgtatcaaatttatcaaaatcaaaccttgaagcaatagcctttctgatgcgaccactctcctctt |
309 |
Q |
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| T |
11202649 |
cacaacataacataacacaggcaattaatgaataatgtatcaaatttatcaaaatcaaaccttgaagcaatagcttttctgatgcgaccactctcctctt |
11202550 |
T |
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| Q |
310 |
gctgctcctttatcgtcttcgtagatagcgaatccctcaccccatcctcatcttcatcatcatcattatca |
380 |
Q |
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| T |
11202549 |
gctgctcctttatcatcttcgtagatagcgaatccctcaccccatcctcatcttcatcatcatcatcatca |
11202479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 11202857 - 11202749
Alignment:
| Q |
2 |
catcaccatccaatttaaccctaaataacacacccaaatcagtcaatttagccaaaagagtcacattgaaatcaaaataaacacaacccattgcttcaat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11202857 |
catcaccatccaatttaaccctaaataacacacccaaatcagtcaatttagccaaaagagtcacattgaaatcaaaataaacacaacccattgcttcaat |
11202758 |
T |
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| Q |
102 |
tattcaatt |
110 |
Q |
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| T |
11202757 |
tattcaatt |
11202749 |
T |
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