View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15933_low_9 (Length: 238)
Name: NF15933_low_9
Description: NF15933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15933_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 1160965 - 1160824
Alignment:
| Q |
17 |
atattaatggtttgatctatacatgtttatatcgtaattaagtttgttccaataattataggtctaacaaacaaataaagatatatatttgtacaaaatg |
116 |
Q |
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| T |
1160965 |
atattaatgatttgatctatacatgtttatatggtaattaagtttgttccaataattatagatctaacaaacaaataaagatatatatttgtacaaaatg |
1160866 |
T |
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| Q |
117 |
atttgcaagaaatcttcacatatatacataaatatcatcatt |
158 |
Q |
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| T |
1160865 |
atttgcaagaaatcttcacatatatacataaatatcatcatt |
1160824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 1160755 - 1160714
Alignment:
| Q |
166 |
ctttctattaccattttttgggaccacattaaattactttca |
207 |
Q |
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| T |
1160755 |
ctttctattaccattttttgggaccacattgaattactttca |
1160714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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