View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_high_1 (Length: 931)
Name: NF15934_high_1
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 689; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 689; E-Value: 0
Query Start/End: Original strand, 154 - 921
Target Start/End: Original strand, 44286453 - 44287233
Alignment:
| Q |
154 |
attttaatgtgtgaagaacatggtcaaatccacagcatgcccaggcccggctatgtgtgttgcaacaataatttgacacgtacacagactaagggggcaa |
253 |
Q |
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| T |
44286453 |
attttaatgtgtgaagaacatggtcaaatccacagcatgcccaggcccggctatgtgtgttgcaacaataatttgacacgtacacagactaatggggcaa |
44286552 |
T |
|
| Q |
254 |
tgtatgggacacatttggacatttaggggtcaaaattaggacaat-atgtatgttatttcaaaaacctaatttgtcacgtagtatttgattcgaatgtaa |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44286553 |
tgtatgggacacatttggacatttaggggtcaaaattaggacaattatgtatgttatttcaaaaacctaatttgtcacgtagtatttgattcgaatgtaa |
44286652 |
T |
|
| Q |
353 |
cccctaaatattcaacattcgtatcaagcatttattcacatgcatttgagctgtattttctattcattgatgtatccctcccttgataacttttgttgtg |
452 |
Q |
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| T |
44286653 |
cccctaaatattcaacattcgtatcaagcatttattcacatgcatttgagctgtattttctattcattgatgtatccctcccttgataacttttgtagtg |
44286752 |
T |
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| Q |
453 |
gggttttgagtnnnnnnnnncttttattgtgaggtttgtcatgtttcataatgtctctgaaatttcacggtagccaacttttcttttgttcctaagtaat |
552 |
Q |
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| T |
44286753 |
gggttttgagtaaaaaaaaacttttattgtgaggtttgtcatgtttcataatgtctctgaaatttcacggtagccaacttttcttttgttcctaagtaat |
44286852 |
T |
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| Q |
553 |
tattgtttttgacaagtgtggttggaaatttgcatagatgttcatcagagcaggctagcaccgattgaagaaggcaagacttgatttttggtgtttgagc |
652 |
Q |
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| T |
44286853 |
tattgtttttgacaagtgtggttggaaatttgcatagatgttcatcagagcaggctagcaccgattgaagaaggcaagacttgatttttggtgtttgagc |
44286952 |
T |
|
| Q |
653 |
agatataaataagggataatcaattgatgaaagttatagaaggatttaaatgtatgtctagttatccaaattcacg------------tacaatgttaga |
740 |
Q |
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| T |
44286953 |
agatataaataagggataatcaaatgatgaaagttatagaaggatttaaatgtatgtctagttatccaaattcacgtaatgatactgttacaatgttaga |
44287052 |
T |
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| Q |
741 |
agcatttagtaattaaaaagaacaaggccacaggaaaaaacatacagacagtagcaataaacacaaaagcaagacttccaaaaccacaccaacacctcca |
840 |
Q |
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| T |
44287053 |
agcatttagtaattaaaaagaacaaggccacaggaaaaaacatacagacagtagcaataaacacaaaagcaagacttccaaaaccacaccaacacctcca |
44287152 |
T |
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| Q |
841 |
catgcagcatgaatagttgaaactttgcaactccaattatgacaatctttgggtccccaaagtacaacttaatgacctttg |
921 |
Q |
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| T |
44287153 |
catgcagcatgaatagttgaaactttgcaactccaattatgacaatcttcgggtccccaaagtacaacttaatgacctttg |
44287233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 44285095 - 44285232
Alignment:
| Q |
21 |
cttagcctaaaaacatgcaaaagtgctcctagcattatgttcttctgatgtggccatgccgatgctatctttccaccacatatcaaaaatctcatatctc |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44285095 |
cttagcctaaaaacatgcaaaagtgctcctagcattatgttcttctgatgtggccatgctgatgctatctttccaccacatatcaaaaatctcatatctc |
44285194 |
T |
|
| Q |
121 |
ctctctctaccatgttgtatgtaacggcccttgatttt |
158 |
Q |
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| T |
44285195 |
ctctctctaccatgttgtatgtaacggcccttgatttt |
44285232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 39397490 - 39397543
Alignment:
| Q |
91 |
ttccaccacatatcaaaaatctcatatctcctctctctaccatgttgtatgtaa |
144 |
Q |
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||||||||| |||||||||||||||| || ||| |||||||||||| ||||||| |
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| T |
39397490 |
ttccaccacctatcaaaaatctcataccttctcgctctaccatgttctatgtaa |
39397543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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