View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_high_12 (Length: 295)
Name: NF15934_high_12
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 3803633 - 3803457
Alignment:
| Q |
11 |
agaagaagaagtggcataaggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtag |
110 |
Q |
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| T |
3803633 |
agaagaagaggtggcataaggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtag |
3803534 |
T |
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| Q |
111 |
caatcaaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
187 |
Q |
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| T |
3803533 |
caatcaaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
3803457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 11 - 187
Target Start/End: Complemental strand, 3814302 - 3814126
Alignment:
| Q |
11 |
agaagaagaagtggcataaggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtag |
110 |
Q |
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| T |
3814302 |
agaagaagaggtggaataaggttcacaatcaatggtcattcttacttcaatttagtccttgtgactaatgttggaggcgctggtgatgtgcattctgtag |
3814203 |
T |
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| Q |
111 |
caatcaaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
187 |
Q |
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| T |
3814202 |
caattaaaggttcaaggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttatttg |
3814126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 184 - 294
Target Start/End: Complemental strand, 9349808 - 9349697
Alignment:
| Q |
184 |
tttgtacagtgatcaagctatacttatatctactatccagatcaatgagtcaccgaaa-accaaagatcacaataatcaccactacattatttctcaata |
282 |
Q |
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| T |
9349808 |
tttgtacagtgaccaagctatacttatatctactatccagatcagtgagtcaccaaaacaccaaagatcacaataatcaccactacattatttctcaatg |
9349709 |
T |
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| Q |
283 |
ttcttcgacatc |
294 |
Q |
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||||||| |||| |
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| T |
9349708 |
ttcttcgccatc |
9349697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 2866378 - 2866227
Alignment:
| Q |
32 |
ttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtagcaatcaaaggttcaaggacta |
131 |
Q |
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| T |
2866378 |
ttcaccatcaatggtcattcttacttcaatttagtccttgtcactaatgttggaggtgctggtgatgtacattctgtggccatcaaaggttcaagatcta |
2866279 |
T |
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| Q |
132 |
gatggcaagccatgtcaaggaattggggacaaaattggcagagcaactctta |
183 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| || |||||||| |
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| T |
2866278 |
gatggcaagccatgtcaaggaattgggggcaaaattggcaaagtaactctta |
2866227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 56052150 - 56052261
Alignment:
| Q |
184 |
tttgtacagtgatcaagctatacttatatctactatccagatcaatgagtcaccgaaa-accaaagatcacaataatcaccactacattatttctcaata |
282 |
Q |
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|||| ||||||| ||| ||||||||| ||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
56052150 |
tttgcacagtgaccaaactatacttacatctactatccagatcagtgagtcatcgaaacaccaaagatcacaataataaccactacattatttctcaatg |
56052249 |
T |
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| Q |
283 |
ttcttcgacatc |
294 |
Q |
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||||||| |||| |
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| T |
56052250 |
ttcttcgccatc |
56052261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 27476976 - 27476819
Alignment:
| Q |
27 |
taaggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtagcaatcaaaggttcaag |
126 |
Q |
| |
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||||||||||||| ||||| || ||||||||||| || | | || || ||||| || ||||| || ||||| |||||| || | |||||||| ||||| |
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| T |
27476976 |
taaggttcacaataaatggccactcttacttcaacctagttttggtcaccaatgtaggtggtgctggggatgttcattctatatccatcaaagggtcaag |
27476877 |
T |
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| Q |
127 |
gactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttat |
184 |
Q |
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||| | |||||| | |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
27476876 |
aactggttggcaaccaatgtcaagaaattggggccaaaattggcaaagcaactcttat |
27476819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 27488234 - 27488077
Alignment:
| Q |
27 |
taaggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtagcaatcaaaggttcaag |
126 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||| || | | || || ||||| || || || || ||||| |||||| || | |||||||| ||||| |
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| T |
27488234 |
taaggttcacaataaatggccactcttacttcaacctagttttggtcaccaatgtaggtggagctggggatgttcattctatatccatcaaagggtcaag |
27488135 |
T |
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| Q |
127 |
gactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaactcttat |
184 |
Q |
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||| |||||||| | |||||||| |||||||| ||||||||||| |||||||||||| |
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| T |
27488134 |
aactggatggcaaccaatgtcaagaaattggggtcaaaattggcaaagcaactcttat |
27488077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 126
Target Start/End: Complemental strand, 18300665 - 18300568
Alignment:
| Q |
29 |
aggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtagcaatcaaaggttcaag |
126 |
Q |
| |
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||||||||||||||||| |||||||||||||| || | || || || ||||| || ||||| |||||||| ||||| ||||| || ||||| ||||| |
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| T |
18300665 |
aggttcacaatcaatggacattcttacttcaacttggttctagtaacaaatgtgggtggtgctggtgatgtacattcagtagctattaaaggatcaag |
18300568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 177
Target Start/End: Complemental strand, 31999648 - 31999497
Alignment:
| Q |
26 |
ataaggttcacaatcaatggtcattcttacttcaatttaatccttgtgactaatgttggaggtgcaggtgatgtgcattctgtagcaatcaaaggttcaa |
125 |
Q |
| |
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|||||||||||||||||||| || ||||||||||| || || | | || ||||| | || ||||| |||| ||| | || |||||||||| || | |
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| T |
31999648 |
ataaggttcacaatcaatggccactcttacttcaacttgattttgatcaccaatgtcgcgggagcaggagatgcccatgcagtgtcaatcaaagggtcca |
31999549 |
T |
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| Q |
126 |
ggactagatggcaagccatgtcaaggaattggggacaaaattggcagagcaa |
177 |
Q |
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||||| |||||| |||||||||| |||||||| ||||| ||||||||||| |
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| T |
31999548 |
aaactagctggcaacccatgtcaagaaattggggccaaaactggcagagcaa |
31999497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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