View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15934_high_21 (Length: 208)
Name: NF15934_high_21
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 6954421 - 6954590
Alignment:
| Q |
21 |
gcacaagatttgattacgagtttctattattaaagcataggattttcagattataacttatgtttagatactacggttcaatttacaagattagtccatc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954421 |
gcacaagatttgattacgagtttctattattaaagcataggattttcagattataacttatgtttagatactacggttcaatttacaagattagtccatc |
6954520 |
T |
|
| Q |
121 |
gccacttatcaaaaactattgagtcataccaaattaaacaaattgcattaattttttatatgttcctttt |
190 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6954521 |
gccccttatcaaaaactattgagtcataccaaattaaacaaattgcattaattttttatatgttcctttt |
6954590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 4999917 - 4999957
Alignment:
| Q |
75 |
aacttatgtttagatactacggttcaatttacaagattagt |
115 |
Q |
| |
|
||||||| |||| |||||||||| ||||||||||||||||| |
|
|
| T |
4999917 |
aacttatatttaaatactacggtccaatttacaagattagt |
4999957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 10842618 - 10842682
Alignment:
| Q |
41 |
tttctattattaaagcataggattttcagattataacttatgtttagatactacggttcaattta |
105 |
Q |
| |
|
||||||||||| |||| |||||||| || |||| || || |||||| |||||||||| ||||||| |
|
|
| T |
10842618 |
tttctattattcaagcttaggatttacatattacaatttgtgtttaaatactacggtccaattta |
10842682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University