View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15934_high_4 (Length: 447)

Name: NF15934_high_4
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15934_high_4
NF15934_high_4
[»] chr1 (4 HSPs)
chr1 (15-432)||(43471816-43472238)
chr1 (214-257)||(26418774-26418817)
chr1 (214-257)||(32108463-32108506)
chr1 (190-241)||(5714785-5714836)
[»] chr3 (4 HSPs)
chr3 (292-432)||(42595877-42596015)
chr3 (214-257)||(32073593-32073636)
chr3 (211-287)||(42595642-42595717)
chr3 (191-257)||(17058781-17058847)
[»] chr7 (4 HSPs)
chr7 (214-257)||(29526865-29526908)
chr7 (213-257)||(7097405-7097449)
chr7 (149-235)||(13597025-13597111)
chr7 (138-198)||(47300343-47300403)
[»] chr6 (1 HSPs)
chr6 (214-257)||(15950837-15950880)
[»] chr4 (4 HSPs)
chr4 (214-257)||(47783028-47783071)
chr4 (141-236)||(38836814-38836909)
chr4 (142-257)||(45421628-45421743)
chr4 (213-257)||(4946678-4946722)
[»] chr2 (5 HSPs)
chr2 (190-257)||(19933896-19933963)
chr2 (346-403)||(15521178-15521235)
chr2 (185-286)||(5849190-5849290)
chr2 (149-257)||(3981709-3981817)
chr2 (205-257)||(26370495-26370547)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 15 - 432
Target Start/End: Complemental strand, 43472238 - 43471816
Alignment:
Q  15 ttattcttttctttggttatatttaattttcttatgtaaacaatatcaattcaagtcaatttattagtgaaacatagaaggtta----ccaccttgcatg 110  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||| ||||    
T  43472238 ttattcatttctttggttatatttaatttccttatgtaaacaatatcaattcaagtcaatctattagtgaaacatagaaggttaattaccaccttccatg 43472139  T
Q  111 tactttggaatcnnnnnnn-agaggaaaatatttataatattt-cattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaacta 208  Q
    ||||||||||||        | ||||||||| |||||| |||| ||||||||||||||||||||||| |||||| |  ||||||||||| || |||||||    
T  43472138 tactttggaatcttttttttacaggaaaatacttataacattttcattaattaatatgtgctcaatgcattataatgattcaaccaaaacttggaaacta 43472039  T
Q  209 gttgataatgtggctgccttagctaattcataagcagcctcatttgctttgttctctcacaaactctacacttgagtttacttagtaacacctaaacaaa 308  Q
      ||||||||||||||||||||||||||||||||||||||||||| |||  ||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  43472038 aatgataatgtggctgccttagctaattcataagcagcctcatttacttgtttc-ctcacaaactctacacttgagtttacttagtaagacctaaacaaa 43471940  T
Q  309 gatctacaagcctggatgatattaccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatcgattg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||    
T  43471939 gatctacaagcctggatgatattaccaaattcagtagcatcatgtttagtggataaaaagctaccaactaccctctttgtatcaagctcaaaatcgattg 43471840  T
Q  409 gaccaagattaagaacatggaccc 432  Q
    |||||| |||||||||||||||||    
T  43471839 gaccaatattaagaacatggaccc 43471816  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 26418774 - 26418817
Alignment:
Q  214 taatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  26418774 taatgtggctgccttagctaattcatgagcaacctcatttgctt 26418817  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 32108506 - 32108463
Alignment:
Q  214 taatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  32108506 taatgtggctgccttagctaattcatgagcaacctcatttgctt 32108463  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 5714836 - 5714785
Alignment:
Q  190 aaccaaaatttagaaactagttgataatgtggctgccttagctaattcataa 241  Q
    ||||||||| ||||||||||||| ||||||| | ||||||||||| ||||||    
T  5714836 aaccaaaatatagaaactagttgttaatgtgtccgccttagctaactcataa 5714785  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 432
Target Start/End: Original strand, 42595877 - 42596015
Alignment:
Q  292 agtaacacctaaacaaagatctacaagcctggatgatattaccaaattcagtagcatcatgttttgtggataaaaagctatcaaccaccctctttgtatc 391  Q
    ||||| |||||||||||| |||||||||||| || |||  |||||||| | ||||||||||||| ||||||||||||||||| || ||||| |||  |||    
T  42595877 agtaagacctaaacaaagttctacaagcctgaatcata--accaaattaaatagcatcatgtttagtggataaaaagctatcgactacccttttttcatc 42595974  T
Q  392 aagttcaaaatcgattggaccaagattaagaacatggaccc 432  Q
    ||| |||||||  |||| ||||||||||||||| |||||||    
T  42595975 aagctcaaaattaattgtaccaagattaagaacgtggaccc 42596015  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 32073593 - 32073636
Alignment:
Q  214 taatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  32073593 taatgtggctgccttagctaattcatgagcaacctcatttgctt 32073636  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 42595642 - 42595717
Alignment:
Q  211 tgataatgtggctgccttagctaattcataagcagcctcatttgctttgttctctcacaaactctacacttgagttt 287  Q
    |||||||||||| ||||||| ||||| || || ||| ||||||||||   || ||||||||||||||||||||||||    
T  42595642 tgataatgtggccgccttagttaatttatgaggagcttcatttgcttgtctc-ctcacaaactctacacttgagttt 42595717  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 17058781 - 17058847
Alignment:
Q  191 accaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||| |||||||| ||| |||||||  ||||| ||||| |||| |||| ||||||||||||    
T  17058781 accaaaatttggaaactagctgacaatgtggtcgcctttgctaactcatgagcaacctcatttgctt 17058847  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 29526908 - 29526865
Alignment:
Q  214 taatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  29526908 taatgtggctgccttagctaattcatgagcaacctcatttgctt 29526865  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 7097405 - 7097449
Alignment:
Q  213 ataatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||||||||||||| |||| |||| ||||||||||||    
T  7097405 ataatgtggctgccttagctaactcatgagcaacctcatttgctt 7097449  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 13597111 - 13597025
Alignment:
Q  149 atttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaat 235  Q
    |||||||| ||||| ||||| ||||| || | | ||||||| | |||||| ||||||||||||||  || |||| ||||||||||||    
T  13597111 atttcattgattaaaatgtgttcaatataatttggtatttctaacaaaatctagaaactagttgaggatatggccgccttagctaat 13597025  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 47300403 - 47300343
Alignment:
Q  138 atatttataatatttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaat 198  Q
    |||||||||||||||||||||| || | ||| |||||  | | ||||||||||||||||||    
T  47300403 atatttataatatttcattaatcaaaacgtgttcaatacaatttagtatttcaaccaaaat 47300343  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 15950880 - 15950837
Alignment:
Q  214 taatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  15950880 taatgtggctgccttagctaattcatgagcaacctcatttgctt 15950837  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 47783071 - 47783028
Alignment:
Q  214 taatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||||||||||||||||| |||| ||||||||||||    
T  47783071 taatgtggctgccttagctaattcatgagcaacctcatttgctt 47783028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 38836909 - 38836814
Alignment:
Q  141 tttataatatttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaatt 236  Q
    ||||||| ||||||||||| || ||||| |||||  ||| |||||| | ||||||||| |||||| ||| |||| ||| ||| |||||| ||||||    
T  38836909 tttataacatttcattaatcaaaatgtgttcaatacattctagtatattaaccaaaatctagaaattagctgattatgaggccgccttaactaatt 38836814  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 257
Target Start/End: Complemental strand, 45421743 - 45421628
Alignment:
Q  142 ttataatatttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaattcataa 241  Q
    |||||| ||||||||||| || ||||| |||||  ||||| |||| | ||||| ||| | |||||||  |||| ||| ||| ||||||||||||||||      
T  45421743 ttataacatttcattaatcaaaatgtgttcaatacattatggtatattaaccagaatctggaaactaactgatgatgaggccgccttagctaattcatgg 45421644  T
Q  242 gcagcctcatttgctt 257  Q
    ||| ||||||| ||||    
T  45421643 gcaacctcattcgctt 45421628  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 4946678 - 4946722
Alignment:
Q  213 ataatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    |||||||||||| ||||||||| |||| |||| ||||||||||||    
T  4946678 ataatgtggctgtcttagctaactcatgagcaacctcatttgctt 4946722  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 19933896 - 19933963
Alignment:
Q  190 aaccaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    ||||||||| | ||||||||  ||||||||||| ||||| ||||||||||  ||||||||||||||||    
T  19933896 aaccaaaatatggaaactagccgataatgtggcagcctttgctaattcatgggcagcctcatttgctt 19933963  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 403
Target Start/End: Complemental strand, 15521235 - 15521178
Alignment:
Q  346 catcatgttttgtggataaaaagctatcaaccaccctctttgtatcaagttcaaaatc 403  Q
    |||||||||||| ||| ||||||||||||||||| ||||||| | |||| ||||||||    
T  15521235 catcatgttttggggacaaaaagctatcaaccactctctttgcagcaagctcaaaatc 15521178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 286
Target Start/End: Complemental strand, 5849290 - 5849190
Alignment:
Q  185 atttcaaccaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcctcatttgctttgttctctcacaaactctacacttgag 284  Q
    ||||| |||||||| |  |||||||||||  |||||||||||| |||||||  || ||| |||||||||| |||||   ||||||||||| ||||| |||    
T  5849290 atttctaccaaaatctgaaaactagttgaggatgtggctgcctcagctaatctatgagctgcctcatttg-tttgtctcctcacaaactcaacactagag 5849192  T
Q  285 tt 286  Q
    ||    
T  5849191 tt 5849190  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 257
Target Start/End: Original strand, 3981709 - 3981817
Alignment:
Q  149 atttcattaattaatatgtgctcaatgtattatagtatttcaaccaaaatttagaaactagttgataatgtggctgccttagctaattcataagcagcct 248  Q
    ||||||||||| || ||||| |||||  ||| | |||| | ||||| ||| | |||||||| |||| ||| ||| ||||||||||||||||  ||| |||    
T  3981709 atttcattaatcaaaatgtgttcaatacattctggtatattaaccagaatctggaaactagctgatgatgaggccgccttagctaattcatgggcaacct 3981808  T
Q  249 catttgctt 257  Q
    |||| ||||    
T  3981809 cattcgctt 3981817  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 26370547 - 26370495
Alignment:
Q  205 actagttgataatgtggctgccttagctaattcataagcagcctcatttgctt 257  Q
    ||||||||| |||  ||||||||||||||||| || |||| ||||||||||||    
T  26370547 actagttgacaataaggctgccttagctaatttatgagcaacctcatttgctt 26370495  T

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