View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_high_6 (Length: 412)
Name: NF15934_high_6
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 40432362 - 40432614
Alignment:
| Q |
18 |
gaacttgccacaagcaacatgaatgtcaaaaatgttgcatcctctcaaacatgtatttgatatttcaactgtgtgtgttggaatgccattcattggggct |
117 |
Q |
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| T |
40432362 |
gaacttgccacaagcaacatgaatgtcaaaaatgttgcatcctctcaaacatgtatttgatatttcaactgtgtgtgttggaatgccattcattggggct |
40432461 |
T |
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| Q |
118 |
gtgggactttggcttatagtaataaaatacttgctgcattgtttaccagctgcatgaacaaaattaaactttgaacttatcacattttatttgatgtgat |
217 |
Q |
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| T |
40432462 |
gtgggactttggcttatcgtaataaaatacttgctgcattgtttaccagctgcatgaacaaaattaaactttgaacttaccacattttatttgatgtgat |
40432561 |
T |
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| Q |
218 |
gaatgtgagacgatgttacatgtttttggtttttctatctatcatgcataaatttat |
274 |
Q |
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| T |
40432562 |
gaatgtgagacgttgttacatgtttttggtttt----tctatcatgcataaatttat |
40432614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 280 - 397
Target Start/End: Original strand, 40433337 - 40433452
Alignment:
| Q |
280 |
ttaataaaggttaagagttttattcgtaaaaacaatcaccttgatgagtgccatattttccatgattaaggagtgtgtaattagcttctggctgcgaatc |
379 |
Q |
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| T |
40433337 |
ttaataaaggttaagagttttattcgtaaaaacaatcaccttgatgagtgccatattttccatgattaggga--gtgtaattagcttctggctgcgaatc |
40433434 |
T |
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| Q |
380 |
cggacccaaagcagcaac |
397 |
Q |
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| T |
40433435 |
cggacccaaagcagcaac |
40433452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 40435983 - 40436070
Alignment:
| Q |
25 |
ccacaagcaacatgaatgtcaaaaatgttgcatcctctcaaacatgtatttgatatttcaactgtgtgtgttggaatgccattcattg |
112 |
Q |
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| T |
40435983 |
ccacaagcaacatgaatgttagagattttgcatcctctcacacatgtatttgctatctcaactatgtatgttgtaatgccattaattg |
40436070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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