View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_12 (Length: 375)
Name: NF15934_low_12
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 25619517 - 25619172
Alignment:
| Q |
17 |
aaaattctctcgctatcaatagcaatgctcattctaaaatataaaactccaattgctagctttaaattagaattaattatggagagaaaatcagttatac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25619517 |
aaaattctctcgctatcaatagcaatgctcattctaaaatataaaactccaattgctagctttaaattagaattaattatggagagaaaatcagttatac |
25619418 |
T |
|
| Q |
117 |
tagaataaaaaataaccatacaattcataatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25619417 |
tagaataaaaaataaccatacaattcataatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatca |
25619318 |
T |
|
| Q |
217 |
tcttaagtttaacacagaaatgagcgaataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaa |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25619317 |
tcttaagtttaacacagaaatgagcgaataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaa |
25619218 |
T |
|
| Q |
317 |
acataataaagtttatgatttggattatatgctgttattttgcttc |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25619217 |
acataataaagtttatgatttggattatatgctgttattttgcttc |
25619172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 145 - 362
Target Start/End: Complemental strand, 25632982 - 25632764
Alignment:
| Q |
145 |
aatcaattttagcacacaattggcgtcagatttgattaaagtatttgtttaaatcattttctatgttcatcatcttaagtttaa-cacagaaatgagcga |
243 |
Q |
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|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||| || | ||| | || |
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| T |
25632982 |
aatcaattttagcacacaattgtcgtcagatttgatcaaagtatttgtttaaatcattttctatatgcatcatcttaagtttactcaaaaaaaaaaaaga |
25632883 |
T |
|
| Q |
244 |
ataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaaacataataaagtttatgatttggatta |
343 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||| |||||||| | ||||||| |
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| T |
25632882 |
gggaataaatttactcgatttaagaaccgatgactatttgttggcttgtgactagataggtctacttatgaaaacataaataagtttatcaggtggatta |
25632783 |
T |
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| Q |
344 |
tatgctgttattttgcttc |
362 |
Q |
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||||||||||||||||||| |
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| T |
25632782 |
tatgctgttattttgcttc |
25632764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 244 - 362
Target Start/End: Complemental strand, 25643077 - 25642960
Alignment:
| Q |
244 |
ataaataaatttactcgatttaagaaccgatgactatcagttggcttgtaacgagataggtctacttatgaaaacataataaagtttatgatttggatta |
343 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||||| |||| ||||| | |||||||| | ||||||| |
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| T |
25643077 |
ataaataaatttacacgatttaagaaccgatgcctatcagttggcttggaactagataggtctacttgtgaacacatatttaagtttatcaggtggatta |
25642978 |
T |
|
| Q |
344 |
tatgctgttattttgcttc |
362 |
Q |
| |
|
||| ||||||||||||||| |
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|
| T |
25642977 |
tat-ctgttattttgcttc |
25642960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 25624526 - 25624477
Alignment:
| Q |
47 |
attctaaaatataaaactccaattgctagctttaaattagaattaattat |
96 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25624526 |
attctaatatataaaactccaatttctagctttaaattagaattaattat |
25624477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 47
Target Start/End: Original strand, 35292993 - 35293023
Alignment:
| Q |
17 |
aaaattctctcgctatcaatagcaatgctca |
47 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
35292993 |
aaaattctctcgctatcaatagcaatgctca |
35293023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 3808756 - 3808796
Alignment:
| Q |
80 |
aaattagaattaattatggagagaaaatcagttatactaga |
120 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||| |||||| |
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| T |
3808756 |
aaattagaattaattatggagacaaaatcaattacactaga |
3808796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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