View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_13 (Length: 362)
Name: NF15934_low_13
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 36350672 - 36350460
Alignment:
| Q |
6 |
aggagcagagaaaggccaaaatagaagaaacaaacacaagtgaatcttggttgcagaaaacagacatacaaagaggaaaatttaacacaaaaatgattag |
105 |
Q |
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| T |
36350672 |
aggaacagaaaaaggccaaaatagaagaaacaaacacaagtgaatcttggttgcagaaaacagacatacaaagagaaaaatttaacacaaaaatgattag |
36350573 |
T |
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| Q |
106 |
tctcttttggttaagttaactaatgtactctttcaaaagatctattaacatgaacataaatataaactcaatgttcctcaaaaagaagcaacaaagacat |
205 |
Q |
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| T |
36350572 |
tctcttttggttaagttaactaatgtactctttcaaaagatctattaacatgaacataaatataaactcaatgttcctcaaaaagaagcaacaaagacat |
36350473 |
T |
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| Q |
206 |
ttctttgacttat |
218 |
Q |
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| T |
36350472 |
ttctttgacttat |
36350460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 271 - 344
Target Start/End: Complemental strand, 36350407 - 36350334
Alignment:
| Q |
271 |
ttcttcagtagttacctgttatttgcatattcatagaggcggccgcgagtcgagaagactataagagcaacttc |
344 |
Q |
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| T |
36350407 |
ttcttcagtagttacctgttatttgcatattcatagaggcggccgcgagtcgagaagactataagagcaacttc |
36350334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 283 - 346
Target Start/End: Complemental strand, 5546495 - 5546432
Alignment:
| Q |
283 |
tacctgttatttgcatattcatagaggcggccgcgagtcgagaagactataagagcaacttctg |
346 |
Q |
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| T |
5546495 |
tacctgttattagcatactcatagagccgtccacggctagagaagactataagagcaacttctg |
5546432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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