View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_21 (Length: 258)
Name: NF15934_low_21
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 2667227 - 2667014
Alignment:
| Q |
18 |
aaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacctgtctgtt |
117 |
Q |
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| T |
2667227 |
aaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacctgtctgtt |
2667128 |
T |
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| Q |
118 |
gcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataacccttgtctcttgcttgaccagttgtgtcttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667127 |
gcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataacccttgtctcttgcttgaccagttgtgtcttg |
2667028 |
T |
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| Q |
218 |
ggttttatcctttg |
231 |
Q |
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|||||||||||||| |
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| T |
2667027 |
ggttttatcctttg |
2667014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 2676245 - 2676032
Alignment:
| Q |
18 |
aaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacctgtctgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676245 |
aaatggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacctgtctgtt |
2676146 |
T |
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| Q |
118 |
gcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataacccttgtctcttgcttgaccagttgtgtcttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676145 |
gcaaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataacccttgtctcttgcttgaccagttgtgtcttg |
2676046 |
T |
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| Q |
218 |
ggttttatcctttg |
231 |
Q |
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|||||||||||||| |
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| T |
2676045 |
ggttttatcctttg |
2676032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 2682271 - 2682060
Alignment:
| Q |
20 |
atggtccttgtcttcctcatcattattcattcctaaagtgttcttaactgcttcagttgcaccttgtgccatacccttaaccttctcacctgtctgttgc |
119 |
Q |
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||||||||| |||||||| |||| |||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||| || |||||||| || |
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| T |
2682271 |
atggtccttatcttcctcgtcatgtgccattccaaaagtgttcttaactgcttcagtagcactttgggccatacccttaaccttttctcctgtctgctgt |
2682172 |
T |
|
| Q |
120 |
aaaaacccagctgagttgtcctttcctgattgggcagtttcttttgtagcctggcccatttcataacccttgtctcttgcttgaccagttgtgtcttggg |
219 |
Q |
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|| ||||| ||||||||||| ||||||||||||||||||||||| || | |||||| || || | || || ||||| |||||||||||||||||||||| |
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| T |
2682171 |
aagaaccctgctgagttgtcttttcctgattgggcagtttctttggttgactggccaatctccgatcctttttctctagcttgaccagttgtgtcttggg |
2682072 |
T |
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| Q |
220 |
ttttatcctttg |
231 |
Q |
| |
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||| ||||||| |
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| T |
2682071 |
ctttttcctttg |
2682060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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