View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_22 (Length: 255)
Name: NF15934_low_22
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6954178 - 6953939
Alignment:
| Q |
1 |
agaaaaagtgaattaaggaaactttttcaatttggttagttttgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaa |
100 |
Q |
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| T |
6954178 |
agaaaaagtgaattaaggaaactttttcaatttggttagttttgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaa |
6954079 |
T |
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| Q |
101 |
taaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatcaacaca |
200 |
Q |
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| T |
6954078 |
taaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatcaacaca |
6953979 |
T |
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| Q |
201 |
aaagctagcatccaaaacctcattgaaaacattatctgtg |
240 |
Q |
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| T |
6953978 |
aaagctagcatccaaaacctcattgaaaacattatctgtg |
6953939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 6963709 - 6963492
Alignment:
| Q |
26 |
ttcaatttggttagttttgctaacctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgta |
125 |
Q |
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| T |
6963709 |
ttcaatttggtttgttttgctaacctctaattgaaattctaatctattgagcttcaaaagatatagcaatgcaaataaatcatcagtatcaacatctgta |
6963610 |
T |
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| Q |
126 |
tccaaaagaatcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatat-----gatcaacacaaaagctagcatccaaaacct |
220 |
Q |
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| T |
6963609 |
tccaaaagaatcctttgaggctttccttcaactatattcaaagaagctccaaaaatttctgatatgatctgatcaacacaaaagctagcatccaaaacct |
6963510 |
T |
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| Q |
221 |
cattgaaaacattatctg |
238 |
Q |
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| T |
6963509 |
cattgaaaacattctctg |
6963492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 18134631 - 18134710
Alignment:
| Q |
72 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
151 |
Q |
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| T |
18134631 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
18134710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 49121840 - 49121919
Alignment:
| Q |
72 |
ttgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggctttcc |
151 |
Q |
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| T |
49121840 |
ttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggctttcc |
49121919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 49105241 - 49105320
Alignment:
| Q |
48 |
acctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatc |
127 |
Q |
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| T |
49105241 |
acctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatc |
49105320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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