View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15934_low_23 (Length: 255)

Name: NF15934_low_23
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15934_low_23
NF15934_low_23
[»] chr3 (8 HSPs)
chr3 (128-238)||(3262258-3262367)
chr3 (1-89)||(3262404-3262492)
chr3 (130-241)||(30993240-30993352)
chr3 (128-180)||(24177926-24177978)
chr3 (128-245)||(18705523-18705639)
chr3 (128-180)||(18534485-18534536)
chr3 (128-228)||(3593049-3593149)
chr3 (134-187)||(32657257-32657309)
[»] scaffold0088 (1 HSPs)
scaffold0088 (131-237)||(35497-35604)
[»] scaffold0281 (1 HSPs)
scaffold0281 (128-242)||(1821-1935)
[»] chr1 (3 HSPs)
chr1 (131-245)||(18513819-18513934)
chr1 (144-236)||(23632173-23632266)
chr1 (151-229)||(12786235-12786315)
[»] scaffold0094 (1 HSPs)
scaffold0094 (129-187)||(48232-48290)
[»] chr8 (2 HSPs)
chr8 (128-242)||(17290600-17290715)
chr8 (131-166)||(6465669-6465704)
[»] chr4 (3 HSPs)
chr4 (129-242)||(19611924-19612036)
chr4 (129-242)||(25126238-25126349)
chr4 (156-242)||(23974126-23974213)
[»] chr7 (3 HSPs)
chr7 (128-185)||(16250380-16250437)
chr7 (132-229)||(32945329-32945425)
chr7 (131-242)||(18147606-18147719)
[»] scaffold0323 (1 HSPs)
scaffold0323 (128-187)||(16222-16281)
[»] chr6 (2 HSPs)
chr6 (130-181)||(19566945-19566996)
chr6 (131-242)||(19769032-19769145)
[»] chr5 (1 HSPs)
chr5 (135-229)||(39435973-39436066)
[»] chr2 (2 HSPs)
chr2 (138-187)||(16093511-16093560)
chr2 (202-242)||(27386940-27386980)


Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 3262367 - 3262258
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttaccttagtttgtagaatctaatgatttcctacgatgaaatctct 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||    
3262367 cccttcactacccatatgttcatacaatccttatggtgaatagagacgctccc-ttaccttagtttatagaatctaatgatttcctacgatgaaatctct 3262269  T
228 ctctacgttct 238  Q
    |||||| ||||    
3262268 ctctacattct 3262258  T

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Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3262492 - 3262404
Alignment:
1 tatttgattttcataaaatccccaatgttaggttttcattaatttaaatcacaacatcaaattagagcatgaatttgacatgaattcat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3262492 tatttgattttcataaaatccccaatgttaggttttcattaatttaaatcacaacatcaaattagagcatgaatttgacatgaattcat 3262404  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 30993352 - 30993240
Alignment:
130 cttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctc 228  Q
    |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||| | |||| ||| |||  |||| ||||||    
30993352 cttccctacccatatgttcatacaacccttatggtgaatagagactccccccttacctctagtttggagaatttgatgaattcatacagtgaagtctctc 30993253  T
229 tctacgttcttct 241  Q
    || | ||||||||    
30993252 tccaggttcttct 30993240  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 24177978 - 24177926
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccc 180  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||    
24177978 cccttcactacccatatgttcatagaatccttatggtgaatagagactccccc 24177926  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 18705639 - 18705523
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc 226  Q
    ||||||||||||| ||||||||||||| ||||||||| |||||||||  ||||| ||||| ||||||   |||  | |||||||| || | |||||||||    
18705639 cccttcactacccttatgttcatacaa-ccttatggtaaatagagac-tcccccatacctctagttttacgaaattgatgatttcatatggtgaaatctc 18705542  T
227 tctctacgttcttctcact 245  Q
    |||||||||||||||||||    
18705541 tctctacgttcttctcact 18705523  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 18534536 - 18534485
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccc 180  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||    
18534536 cccttcactacc-atatgttcatacaatccttatggtgaatagagactccccc 18534485  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 3593049 - 3593149
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc 226  Q
    |||| |||||| | |||| |||||||| ||||||| ||||||||||| | |||||||||| |||||||  |||| | |||||||||||||  ||||||||    
3593049 ccctgcactacacgtatgatcatacaacccttatgatgaatagagactctccccttacctctagtttgccgaat-tgatgatttcctacggagaaatctc 3593147  T
227 tc 228  Q
    ||    
3593148 tc 3593149  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 32657309 - 32657257
Alignment:
134 actacccatatgttcatacaatccttatggtgaatagagacgccccccttacct 187  Q
    ||||||||||||||||||||| |||||| |||||||||||| || |||||||||    
32657309 actacccatatgttcatacaacccttat-gtgaatagagactcctcccttacct 32657257  T

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Target: scaffold0088 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 35604 - 35497
Alignment:
131 ttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct 229  Q
    ||||||||||||||||| |||||| ||||| | ||||||||||| |||||||||||| |||||||| |||| | |||| |||||||| ||||||||||||    
35604 ttcactacccatatgttgatacaacccttacgctgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctct 35505  T
230 ctacgttc 237  Q
    ||||||||    
35504 ctacgttc 35497  T

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Target: scaffold0281 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 1821 - 1935
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc 226  Q
    |||||| ||||| |||| ||||||||| ||||||||| ||||||||| |||||| ||||| ||||||| ||||| | ||||||||||||| |||||||||    
1821 cccttcgctacctatatattcatacaacccttatggtaaatagagactccccccatacctctagtttgcagaat-tgatgatttcctacggtgaaatctc 1919  T
227 tctctacgttcttctc 242  Q
    ||| || |||||||||    
1920 tctgtaggttcttctc 1935  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 18513934 - 18513819
Alignment:
131 ttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacctt-agtttgtagaatctaatgatttcctacgatgaaatctctct 229  Q
    ||||||||| |||||||||||||| |||||||||||||||||||  |||||||||||| |||||   |||  | ||||||||||| | | ||||||||||    
18513934 ttcactacctatatgttcatacaacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctct 18513835  T
230 ctacgttcttctcact 245  Q
    ||| ||||||||||||    
18513834 ctaggttcttctcact 18513819  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 23632266 - 23632173
Alignment:
144 tgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctctctacgtt 236  Q
    ||||||| ||| || |||| | |||||| || |||||||||||| |||||| | |||| | |||| |||||||| |||||||||||||||||||    
23632266 tgttcatgcaacccatatgctaaatagaaactccccccttacctctagtttttcgaatttgatgagttcctacggtgaaatctctctctacgtt 23632173  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 12786235 - 12786315
Alignment:
151 acaatccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct 229  Q
    |||| ||||||| ||||||||||| |||||| |||||| ||||||| ||||| | |||| |||||||| ||||||||||||    
12786235 acaacccttatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctct 12786315  T

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Target: scaffold0094 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 48232 - 48290
Alignment:
129 ccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct 187  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
48232 ccttcactacccatatgatcatacaatccttatggtgaatagagactccccccttacct 48290  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 17290600 - 17290715
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc 226  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||| || |||  ||||  | || ||||| |||| | |||||||    
17290600 cccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatctc 17290699  T
227 tctctacgttcttctc 242  Q
    |||||| |||||||||    
17290700 tctctaggttcttctc 17290715  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 6465669 - 6465704
Alignment:
131 ttcactacccatatgttcatacaatccttatggtga 166  Q
    ||||||||||| ||||||||||||||||||||||||    
6465669 ttcactacccacatgttcatacaatccttatggtga 6465704  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 19612036 - 19611924
Alignment:
129 ccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctct 227  Q
    ||||||||||| |||||||||| ||| ||||||| ||||||||||| |||||| ||||| || |||   |||  | |||||| |||||||||||||||||    
19612036 ccttcactacctatatgttcatgcaa-ccttatg-tgaatagagactccccccatacctctaattttgcgaaattgatgattccctacgatgaaatctct 19611939  T
228 ctctacgttcttctc 242  Q
    ||||| |||||||||    
19611938 ctctaggttcttctc 19611924  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 25126349 - 25126238
Alignment:
129 ccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctct 227  Q
    ||||||||||| ||||||| |||||| |||||||   ||||||||| |||||| ||||| ||||||   |||  | ||||||||||||| | |||| |||    
25126349 ccttcactacctatatgtttatacaacccttatg---aatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttct 25126253  T
228 ctctacgttcttctc 242  Q
    ||||| |||||||||    
25126252 ctctaggttcttctc 25126238  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 23974126 - 23974213
Alignment:
156 ccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctctctacgttcttctc 242  Q
    ||||||| |||||| | || |||||| |||||| ||||||| ||||| | ||||||||||||| |||||||| |||||| |||||||||    
23974126 ccttatgatgaataaaaactccccccattacctctagtttgcagaat-tgatgatttcctacggtgaaatctttctctaggttcttctc 23974213  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 16250437 - 16250380
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttac 185  Q
    |||||| ||||||| |||||||||||| ||||||| ||||||||||| ||||||||||    
16250437 cccttcgctacccacatgttcatacaacccttatgatgaatagagactccccccttac 16250380  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 32945329 - 32945425
Alignment:
132 tcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct 229  Q
    ||||||||||||||||||||||| ||||||| |||||| | || |||||||||||| ||||||   |||  | ||||||||||||| ||||||||||||    
32945329 tcactacccatatgttcatacaa-ccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctct 32945425  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 18147719 - 18147606
Alignment:
131 ttcactacccatatgttcatacaatccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctc 228  Q
    ||||||||||| |||   | |||| ||||||| ||||||||||| |||||| |||||| ||||| | ||||| | |||| ||||||||  ||||||||||    
18147719 ttcactacccacatgagtacacaacccttatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctc 18147620  T
229 tctacgttcttctc 242  Q
    ||||  ||||||||    
18147619 tctagattcttctc 18147606  T

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Target: scaffold0323 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 16222 - 16281
Alignment:
128 cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct 187  Q
    |||||||||||||| ||| |||||||| |||| ||||||||||||||  |||||||||||    
16222 cccttcactacccacatgatcatacaacccttttggtgaatagagacttcccccttacct 16281  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 19566996 - 19566945
Alignment:
130 cttcactacccatatgttcatacaatccttatggtgaatagagacgcccccc 181  Q
    |||||||||||||||||||| |||| |||||||||||||| |||| ||||||    
19566996 cttcactacccatatgttcacacaacccttatggtgaatacagactcccccc 19566945  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 19769145 - 19769032
Alignment:
131 ttcactacccatatgttcatacaatccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctc 228  Q
    ||||||||||| |||   | |||| ||||||| ||||||||||| |||||| |||||| ||||| | ||||| | |||| |||||||| |||||||||||    
19769145 ttcactacccacatgagtacacaacccttatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctc 19769046  T
229 tctacgttcttctc 242  Q
    ||||  ||||||||    
19769045 tctagattcttctc 19769032  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 39436066 - 39435973
Alignment:
135 ctacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct 229  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||| |||||| ||||||   |||  | ||||||||||||| ||||||||||||    
39436066 ctacccatatgttcatacagtc-ttatggtgaatagagactccccc-ttacctctagttttgtgaaattgatgatttcctacggtgaaatctctct 39435973  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 16093511 - 16093560
Alignment:
138 cccatatgttcatacaatccttatggtgaatagagacgccccccttacct 187  Q
    |||||||| | |||||| ||||||||||||||||||| |||| |||||||    
16093511 cccatatgattatacaacccttatggtgaatagagactcccctcttacct 16093560  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 27386980 - 27386940
Alignment:
202 taatgatttcctacgatgaaatctctctctacgttcttctc 242  Q
    ||||||||| ||||| ||||||||||||||| |||||||||    
27386980 taatgattttctacggtgaaatctctctctaggttcttctc 27386940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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