View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15934_low_23 (Length: 255)
Name: NF15934_low_23
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_23 |
 |  |
|
| [»] scaffold0088 (1 HSPs) |
 |  |  |
|
| [»] scaffold0281 (1 HSPs) |
 |  |  |
|
| [»] scaffold0094 (1 HSPs) |
 |  |  |
|
| [»] scaffold0323 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 91; Significance: 3e-44; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 3262367 - 3262258
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttaccttagtttgtagaatctaatgatttcctacgatgaaatctct |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3262367 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgctccc-ttaccttagtttatagaatctaatgatttcctacgatgaaatctct |
3262269 |
T |
 |
| Q |
228 |
ctctacgttct |
238 |
Q |
| |
|
|||||| |||| |
|
|
| T |
3262268 |
ctctacattct |
3262258 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 3262492 - 3262404
Alignment:
| Q |
1 |
tatttgattttcataaaatccccaatgttaggttttcattaatttaaatcacaacatcaaattagagcatgaatttgacatgaattcat |
89 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3262492 |
tatttgattttcataaaatccccaatgttaggttttcattaatttaaatcacaacatcaaattagagcatgaatttgacatgaattcat |
3262404 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 241
Target Start/End: Complemental strand, 30993352 - 30993240
Alignment:
| Q |
130 |
cttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctc |
228 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||| | |||| ||| ||| |||| |||||| |
|
|
| T |
30993352 |
cttccctacccatatgttcatacaacccttatggtgaatagagactccccccttacctctagtttggagaatttgatgaattcatacagtgaagtctctc |
30993253 |
T |
 |
| Q |
229 |
tctacgttcttct |
241 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
30993252 |
tccaggttcttct |
30993240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 24177978 - 24177926
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccc |
180 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
24177978 |
cccttcactacccatatgttcatagaatccttatggtgaatagagactccccc |
24177926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 18705639 - 18705523
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc |
226 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||| ||||| |||||| ||| | |||||||| || | ||||||||| |
|
|
| T |
18705639 |
cccttcactacccttatgttcatacaa-ccttatggtaaatagagac-tcccccatacctctagttttacgaaattgatgatttcatatggtgaaatctc |
18705542 |
T |
 |
| Q |
227 |
tctctacgttcttctcact |
245 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18705541 |
tctctacgttcttctcact |
18705523 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 18534536 - 18534485
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccc |
180 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18534536 |
cccttcactacc-atatgttcatacaatccttatggtgaatagagactccccc |
18534485 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 3593049 - 3593149
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc |
226 |
Q |
| |
|
|||| |||||| | |||| |||||||| ||||||| ||||||||||| | |||||||||| ||||||| |||| | ||||||||||||| |||||||| |
|
|
| T |
3593049 |
ccctgcactacacgtatgatcatacaacccttatgatgaatagagactctccccttacctctagtttgccgaat-tgatgatttcctacggagaaatctc |
3593147 |
T |
 |
| Q |
227 |
tc |
228 |
Q |
| |
|
|| |
|
|
| T |
3593148 |
tc |
3593149 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 32657309 - 32657257
Alignment:
| Q |
134 |
actacccatatgttcatacaatccttatggtgaatagagacgccccccttacct |
187 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||| || ||||||||| |
|
|
| T |
32657309 |
actacccatatgttcatacaacccttat-gtgaatagagactcctcccttacct |
32657257 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 35604 - 35497
Alignment:
| Q |
131 |
ttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct |
229 |
Q |
| |
|
||||||||||||||||| |||||| ||||| | ||||||||||| |||||||||||| |||||||| |||| | |||| |||||||| |||||||||||| |
|
|
| T |
35604 |
ttcactacccatatgttgatacaacccttacgctgaatagagactccccccttacctctagtttgtcgaatttgatgagttcctacggtgaaatctctct |
35505 |
T |
 |
| Q |
230 |
ctacgttc |
237 |
Q |
| |
|
|||||||| |
|
|
| T |
35504 |
ctacgttc |
35497 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 1821 - 1935
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc |
226 |
Q |
| |
|
|||||| ||||| |||| ||||||||| ||||||||| ||||||||| |||||| ||||| ||||||| ||||| | ||||||||||||| ||||||||| |
|
|
| T |
1821 |
cccttcgctacctatatattcatacaacccttatggtaaatagagactccccccatacctctagtttgcagaat-tgatgatttcctacggtgaaatctc |
1919 |
T |
 |
| Q |
227 |
tctctacgttcttctc |
242 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
1920 |
tctgtaggttcttctc |
1935 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 245
Target Start/End: Complemental strand, 18513934 - 18513819
Alignment:
| Q |
131 |
ttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacctt-agtttgtagaatctaatgatttcctacgatgaaatctctct |
229 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||| ||||| ||| | ||||||||||| | | |||||||||| |
|
|
| T |
18513934 |
ttcactacctatatgttcatacaacccttatggtgaatagagacttcccccttacctttagttttgcgaaattgatgatttcctatgttaaaatctctct |
18513835 |
T |
 |
| Q |
230 |
ctacgttcttctcact |
245 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
18513834 |
ctaggttcttctcact |
18513819 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 23632266 - 23632173
Alignment:
| Q |
144 |
tgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctctctacgtt |
236 |
Q |
| |
|
||||||| ||| || |||| | |||||| || |||||||||||| |||||| | |||| | |||| |||||||| ||||||||||||||||||| |
|
|
| T |
23632266 |
tgttcatgcaacccatatgctaaatagaaactccccccttacctctagtttttcgaatttgatgagttcctacggtgaaatctctctctacgtt |
23632173 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 229
Target Start/End: Original strand, 12786235 - 12786315
Alignment:
| Q |
151 |
acaatccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct |
229 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||| |||||| ||||||| ||||| | |||| |||||||| |||||||||||| |
|
|
| T |
12786235 |
acaacccttatgatgaatagagactccccccattacctctagtttggagaatttgatgaattcctacggtgaaatctctct |
12786315 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 48232 - 48290
Alignment:
| Q |
129 |
ccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct |
187 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48232 |
ccttcactacccatatgatcatacaatccttatggtgaatagagactccccccttacct |
48290 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 242
Target Start/End: Original strand, 17290600 - 17290715
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctc |
226 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||| || ||| |||| | || ||||| |||| | ||||||| |
|
|
| T |
17290600 |
cccttcacaacccatatattcatacaacccttatggtgaatagagactccccccttacctctaattttgagaaattgataatttcatacggtaaaatctc |
17290699 |
T |
 |
| Q |
227 |
tctctacgttcttctc |
242 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
17290700 |
tctctaggttcttctc |
17290715 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 166
Target Start/End: Original strand, 6465669 - 6465704
Alignment:
| Q |
131 |
ttcactacccatatgttcatacaatccttatggtga |
166 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6465669 |
ttcactacccacatgttcatacaatccttatggtga |
6465704 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 19612036 - 19611924
Alignment:
| Q |
129 |
ccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctct |
227 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||| ||||||||||| |||||| ||||| || ||| ||| | |||||| ||||||||||||||||| |
|
|
| T |
19612036 |
ccttcactacctatatgttcatgcaa-ccttatg-tgaatagagactccccccatacctctaattttgcgaaattgatgattccctacgatgaaatctct |
19611939 |
T |
 |
| Q |
228 |
ctctacgttcttctc |
242 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
19611938 |
ctctaggttcttctc |
19611924 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 25126349 - 25126238
Alignment:
| Q |
129 |
ccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctct |
227 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||||| ||||||||| |||||| ||||| |||||| ||| | ||||||||||||| | |||| ||| |
|
|
| T |
25126349 |
ccttcactacctatatgtttatacaacccttatg---aatagagactccccccatacctctagttttgcgaaattgatgatttcctacgttcaaatttct |
25126253 |
T |
 |
| Q |
228 |
ctctacgttcttctc |
242 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
25126252 |
ctctaggttcttctc |
25126238 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 23974126 - 23974213
Alignment:
| Q |
156 |
ccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctctctacgttcttctc |
242 |
Q |
| |
|
||||||| |||||| | || |||||| |||||| ||||||| ||||| | ||||||||||||| |||||||| |||||| ||||||||| |
|
|
| T |
23974126 |
ccttatgatgaataaaaactccccccattacctctagtttgcagaat-tgatgatttcctacggtgaaatctttctctaggttcttctc |
23974213 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 16250437 - 16250380
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttac |
185 |
Q |
| |
|
|||||| ||||||| |||||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
16250437 |
cccttcgctacccacatgttcatacaacccttatgatgaatagagactccccccttac |
16250380 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 229
Target Start/End: Original strand, 32945329 - 32945425
Alignment:
| Q |
132 |
tcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct |
229 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| | || |||||||||||| |||||| ||| | ||||||||||||| |||||||||||| |
|
|
| T |
32945329 |
tcactacccatatgttcatacaa-ccttatgatgaatata-actccccccttacctctagttttgcgaaattgatgatttcctacgttgaaatctctct |
32945425 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 18147719 - 18147606
Alignment:
| Q |
131 |
ttcactacccatatgttcatacaatccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctc |
228 |
Q |
| |
|
||||||||||| ||| | |||| ||||||| ||||||||||| |||||| |||||| ||||| | ||||| | |||| |||||||| |||||||||| |
|
|
| T |
18147719 |
ttcactacccacatgagtacacaacccttatgatgaatagagactccccccattacctctagttcggagaatttgatgaattcctacggcgaaatctctc |
18147620 |
T |
 |
| Q |
229 |
tctacgttcttctc |
242 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
18147619 |
tctagattcttctc |
18147606 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0323 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0323
Description:
Target: scaffold0323; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 16222 - 16281
Alignment:
| Q |
128 |
cccttcactacccatatgttcatacaatccttatggtgaatagagacgccccccttacct |
187 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||| |||||||||||||| ||||||||||| |
|
|
| T |
16222 |
cccttcactacccacatgatcatacaacccttttggtgaatagagacttcccccttacct |
16281 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 19566996 - 19566945
Alignment:
| Q |
130 |
cttcactacccatatgttcatacaatccttatggtgaatagagacgcccccc |
181 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| |||| |||||| |
|
|
| T |
19566996 |
cttcactacccatatgttcacacaacccttatggtgaatacagactcccccc |
19566945 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 19769145 - 19769032
Alignment:
| Q |
131 |
ttcactacccatatgttcatacaatccttatggtgaatagagacgcccccc-ttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctc |
228 |
Q |
| |
|
||||||||||| ||| | |||| ||||||| ||||||||||| |||||| |||||| ||||| | ||||| | |||| |||||||| ||||||||||| |
|
|
| T |
19769145 |
ttcactacccacatgagtacacaacccttatgatgaatagagactccccccattacctctagttcgaagaatttgatgaattcctacggtgaaatctctc |
19769046 |
T |
 |
| Q |
229 |
tctacgttcttctc |
242 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
19769045 |
tctagattcttctc |
19769032 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 39436066 - 39435973
Alignment:
| Q |
135 |
ctacccatatgttcatacaatccttatggtgaatagagacgccccccttacct-tagtttgtagaatctaatgatttcctacgatgaaatctctct |
229 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||| ||||| |||||| |||||| ||| | ||||||||||||| |||||||||||| |
|
|
| T |
39436066 |
ctacccatatgttcatacagtc-ttatggtgaatagagactccccc-ttacctctagttttgtgaaattgatgatttcctacggtgaaatctctct |
39435973 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 16093511 - 16093560
Alignment:
| Q |
138 |
cccatatgttcatacaatccttatggtgaatagagacgccccccttacct |
187 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||||| |||| ||||||| |
|
|
| T |
16093511 |
cccatatgattatacaacccttatggtgaatagagactcccctcttacct |
16093560 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 27386980 - 27386940
Alignment:
| Q |
202 |
taatgatttcctacgatgaaatctctctctacgttcttctc |
242 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
27386980 |
taatgattttctacggtgaaatctctctctaggttcttctc |
27386940 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University