View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15934_low_24 (Length: 252)

Name: NF15934_low_24
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15934_low_24
NF15934_low_24
[»] chr7 (4 HSPs)
chr7 (20-239)||(9948698-9948917)
chr7 (173-228)||(1032145-1032200)
chr7 (202-239)||(9942715-9942752)
chr7 (179-239)||(17194005-17194065)
[»] scaffold0300 (1 HSPs)
scaffold0300 (178-239)||(9503-9564)
[»] chr5 (3 HSPs)
chr5 (178-239)||(22639485-22639546)
chr5 (178-232)||(19021316-19021369)
chr5 (178-232)||(6537003-6537057)
[»] chr4 (7 HSPs)
chr4 (178-239)||(43499223-43499284)
chr4 (178-239)||(36651854-36651915)
chr4 (178-239)||(42718496-42718557)
chr4 (178-232)||(9896626-9896680)
chr4 (178-239)||(7743498-7743559)
chr4 (178-232)||(39059841-39059895)
chr4 (178-234)||(37870776-37870832)
[»] chr2 (6 HSPs)
chr2 (178-239)||(12410713-12410774)
chr2 (178-239)||(12422773-12422834)
chr2 (178-239)||(37647891-37647952)
chr2 (178-232)||(6764346-6764400)
chr2 (178-239)||(27271565-27271626)
chr2 (178-239)||(11031704-11031765)
[»] chr8 (6 HSPs)
chr8 (178-239)||(8444373-8444434)
chr8 (178-239)||(24503980-24504041)
chr8 (174-234)||(13089905-13089965)
chr8 (178-239)||(45540241-45540302)
chr8 (190-239)||(45547846-45547895)
chr8 (178-234)||(4034419-4034475)
[»] chr1 (3 HSPs)
chr1 (178-239)||(4532200-4532261)
chr1 (178-239)||(51534591-51534652)
chr1 (178-234)||(34549277-34549333)
[»] chr6 (1 HSPs)
chr6 (178-234)||(12912378-12912434)
[»] scaffold0037 (1 HSPs)
scaffold0037 (178-234)||(891-947)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 9948698 - 9948917
Alignment:
Q  20 agatatgtgtatcagtgctattcaccacaatcatgaagttcatgtttattttacacaccaaatatcagtgccaaaaattgttgcacctccatctccctga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9948698 agatatgtgtatcagtgctattcaccacaatcatgaagttcatgtttattttacacaccaaatatcagtgccaaaaattgttgcacctccatctccctga 9948797  T
Q  120 taatatggtggtctgtctatgaagcacggacactttttgaattatgcgtgtcttatttatggtggttgaaccctttactttgcttaggaatatttatgta 219  Q
    ||| ||||||||| ||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  9948798 taacatggtggtcagtctatgaagcaccgatactttttggattatgcgtgtcttattcatggtggttgaaccctttaccttgcttaggaatatttatgta 9948897  T
Q  220 acagggtagccttctatttt 239  Q
    ||||||||||||||||||||    
T  9948898 acagggtagccttctatttt 9948917  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 1032145 - 1032200
Alignment:
Q  173 tatttatggtggttgaaccctttactttgcttaggaatatttatgtaacagggtag 228  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1032145 tattcatggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtag 1032200  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 9942752 - 9942715
Alignment:
Q  202 cttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  9942752 cttaggaatatttatgtaacagagtagccttctttttt 9942715  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 17194065 - 17194005
Alignment:
Q  179 tggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    ||||||||||| ||||||| ||| || ||||||||| ||||| |||||||| |||| ||||    
T  17194065 tggtggttgaatcctttaccttgtttgggaatatttttgtaatagggtagctttctttttt 17194005  T

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Target: scaffold0300 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 9503 - 9564
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  9503 atggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagtcttctatttt 9564  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 22639485 - 22639546
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  22639485 atggtggttgaaccatttaccttgcttaggaatatttatgtaacagggtagccttctatttt 22639546  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 19021316 - 19021369
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagcctt 232  Q
    |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||    
T  19021316 atggtggttgaaccctttaccttgcttaggaata-ttatgtaactgggtagcctt 19021369  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 6537003 - 6537057
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagcctt 232  Q
    |||||||||||||||||||| ||||||   ||||||||| ||||| |||||||||    
T  6537003 atggtggttgaaccctttaccttgcttgataatatttatataacatggtagcctt 6537057  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 43499223 - 43499284
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  43499223 atggtggttgaaccctttaccttgcttaggaatatttatgtaacagggtagccttctttttt 43499284  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 36651915 - 36651854
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  36651915 atggtggttgaaccctttaccttgcttaggaatatttatgtaacatggtaaccttctatttt 36651854  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 42718496 - 42718557
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  42718496 atggtggttgaaccctttaccttgcttaggaatatttatgtaacggggtagccttctttttt 42718557  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 9896680 - 9896626
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagcctt 232  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  9896680 atggtggttgaaccctttaccttgcttgggaatatttatgtaacagggtagcctt 9896626  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 7743498 - 7743559
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||    
T  7743498 atggtggttgaaccctttaccttgtttaggaatatttatgtagcagggtagccttctttttt 7743559  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 39059895 - 39059841
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagcctt 232  Q
    |||||||||||||| ||||| |||| |  ||||||||||||||||| ||||||||    
T  39059895 atggtggttgaaccatttaccttgcctgcgaatatttatgtaacagagtagcctt 39059841  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 37870832 - 37870776
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 234  Q
    |||||||||||| ||||||| ||||||  |||||||| |||||||||| ||| ||||    
T  37870832 atggtggttgaatcctttaccttgcttgagaatatttttgtaacagggcagcattct 37870776  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 12410713 - 12410774
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  12410713 atggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttctttttt 12410774  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 12422773 - 12422834
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  12422773 atggtggttgaaccctttaccttgcttaggaatatttatgtaacaaggtagccttctttttt 12422834  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 37647891 - 37647952
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| ||||    
T  37647891 atggtggttggaccctttaccttgcttaggaatatttatgtaacatggtagccttctttttt 37647952  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 6764346 - 6764400
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagcctt 232  Q
    |||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  6764346 atggtggttgaaccctttaccttgcttatgaatatttatgtagcagggtagcctt 6764400  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 27271565 - 27271626
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| |||||| |||||| |||||||||| | ||| ||||| ||||    
T  27271565 atggtggttgaaccctttaccttgcttgggaatacttatgtaacaagatagtcttctttttt 27271626  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 11031704 - 11031765
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||| | ||||| |||||| ||||||||| |||||||||| ||| |||| ||||    
T  11031704 atggtggttgaatcatttaccttgcttgggaatatttttgtaacagggcagcattctttttt 11031765  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 8444434 - 8444373
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||    
T  8444434 atggttgttgaactctttaccttgcttaggaatatttatgtaacaggatagccttctatttt 8444373  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 24503980 - 24504041
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  24503980 atggtggctgaaccctttaccttgtttaggaatatttatgtaacagggtagccttctttttt 24504041  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 13089965 - 13089905
Alignment:
Q  174 atttatggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 234  Q
    |||||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  13089965 atttatggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 13089905  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 45540241 - 45540302
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||||||||||||||| |||||| ||||||||||  ||||| |||||| |||| ||||    
T  45540241 atggtggttgaaccctttaccttgcttgggaatatttacataacatggtagctttctttttt 45540302  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 239
Target Start/End: Original strand, 45547846 - 45547895
Alignment:
Q  190 ccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||||| |||||| |||||||||| ||||||||||||| |||| ||||    
T  45547846 ccctttaccttgcttgggaatatttacgtaacagggtagctttctttttt 45547895  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 4034475 - 4034419
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 234  Q
    |||||||||||| | ||||| |||||| ||||||||| |||||||||| ||| ||||    
T  4034475 atggtggttgaatcatttaccttgcttgggaatatttctgtaacagggcagcattct 4034419  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 4532261 - 4532200
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    ||||||||||||||||| || |||||||||||||||||||||||| |||| |||||||||||    
T  4532261 atggtggttgaacccttcaccttgcttaggaatatttatgtaacaaggtatccttctatttt 4532200  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 51534652 - 51534591
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttctatttt 239  Q
    |||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||    
T  51534652 atggtgattgaaccctttaccttgcttaggaatatttatgtaatagggtagcattctatttt 51534591  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 34549277 - 34549333
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 234  Q
    |||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  34549277 atggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 34549333  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 12912434 - 12912378
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 234  Q
    |||||||||||| ||||||| |||||| ||||||||| |||||||||| ||| ||||    
T  12912434 atggtggttgaatcctttaccttgcttgggaatatttttgtaacagggcagcattct 12912378  T

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Target: scaffold0037 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 891 - 947
Alignment:
Q  178 atggtggttgaaccctttactttgcttaggaatatttatgtaacagggtagccttct 234  Q
    |||||||||||| |||| || |||||| ||||||||| |||||||||| ||| ||||    
T  891 atggtggttgaatccttaaccttgcttgggaatatttttgtaacagggcagcattct 947  T

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