View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_25 (Length: 252)
Name: NF15934_low_25
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 3480829 - 3480747
Alignment:
| Q |
128 |
caactttgtgtatttctccctcttctgtattgtacgtataaggagtaagta-cattgtataaatgtggaaatgaaaaaaccat |
209 |
Q |
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| T |
3480829 |
caactttgagtatttctccctcttctgtattgtacgtataaggagtaagtagcattgtataaatgtggaaatgaaaaaaccat |
3480747 |
T |
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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 3456760 - 3456718
Alignment:
| Q |
210 |
agagaaagtgtttttgacttttgttatttatgattaatattgt |
252 |
Q |
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| T |
3456760 |
agagaaagtgtttttgacttttgctatttatgattaatattgt |
3456718 |
T |
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