View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_3 (Length: 705)
Name: NF15934_low_3
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_3 |
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| [»] scaffold0077 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 593; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 33 - 649
Target Start/End: Complemental strand, 46221382 - 46220767
Alignment:
| Q |
33 |
aggaaggttggggaaacggcggcgtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacgatattaa |
132 |
Q |
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| T |
46221382 |
aggaaggttggggaaacggcggcgtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacgatattaa |
46221283 |
T |
|
| Q |
133 |
cgggaaacagacgcgtgaagttccgatcaggtctccacgcgctagtcctttgcctggatatctcacgcgcggttgaattcaatcgctaaattctaggttt |
232 |
Q |
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| T |
46221282 |
cgggaaacagacgcgtgaagttccgatcaggtctccacgcgctagtcctttgcctggatatctcacgcgcggttgaattcaatcgctaaattctaggttt |
46221183 |
T |
|
| Q |
233 |
gctagggagttgatgaaattactagattgatatgcacgtgatctgtgatcgatcgcacgtgtatttttagatttacttcgtgtttttgcttataagaatt |
332 |
Q |
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| T |
46221182 |
gttagggagttgatgaaattactagattgatatgcacgtgatctgtgatcgatcgcacgtgtatttttagatttacttcgtgtttttgcttataagaatt |
46221083 |
T |
|
| Q |
333 |
gaaaattttagaattaatagcgtgtgtttgtttgttagttgatgatgaaaactatacaatttgtataaagttaatgcgattttagtgaaagatctttgaa |
432 |
Q |
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| T |
46221082 |
gaaaa-tttagaattaatagagtgtgtttgtttgttagttgatgatgaaaactatacaatttgtataaagttaatgcgatttaagtgaaagatctttgaa |
46220984 |
T |
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| Q |
433 |
tttttctaattgggaagtttgagtgtaattaagtgtcattcattgagcatgtttgggattacgcgttgagcaattcacttgcgtttacattcaatttggt |
532 |
Q |
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| T |
46220983 |
tttttctaattgggaagtttgagtgtaattaagtgtcattcattgagcatgtttgggattacgcgttgagcaattcacttgcgtttacattcaatttggt |
46220884 |
T |
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| Q |
533 |
aaaagaataattgcttcctggtggccactaattaaacgtggtagtaaattcataagtcttatcacatttggtaaaacacttgaaaactatacaatttaac |
632 |
Q |
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| T |
46220883 |
aaaagaatatttgcttcctggtggccactaattaaacgtggtagtaaattcataagtcttatcacatttggtaaaacacttgaaaactatacaatttaac |
46220784 |
T |
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| Q |
633 |
actataaatactaatat |
649 |
Q |
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||||||||||||||||| |
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| T |
46220783 |
actataaatactaatat |
46220767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 29830997 - 29831134
Alignment:
| Q |
46 |
aaacggcggcgtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacgatattaacgggaaacagacg |
145 |
Q |
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||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| || || ||| | || ||||||||||| | ||| || |
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| T |
29830997 |
aaacgacggtgtttggcagaaggagatattgatgggaggaaaatgtgagccgttggatttctcaggcgttattcattatgatattaacggaagacaaacc |
29831096 |
T |
|
| Q |
146 |
cgtgaagttccgatcaggtctccacgcgctagtccttt |
183 |
Q |
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| T |
29831097 |
ggtgaagttcctctcaggtctccacgcgctattccttt |
29831134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 481 - 579
Target Start/End: Complemental strand, 46217551 - 46217452
Alignment:
| Q |
481 |
atgtttgggattacgcgttgagcaattcacttgcgtttacattcaatttg-gtaaaagaataattgcttcctggtggccactaattaaacgtggtagtaa |
579 |
Q |
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||||||||||||||| ||| |||||||||||||| ||| ||||| ||||| ||||||||||| || |||||| ||| ||||||||||||||||||||||| |
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| T |
46217551 |
atgtttgggattacgtgttcagcaattcacttgcatttgcattcgatttgagtaaaagaatatttccttcctagtgtccactaattaaacgtggtagtaa |
46217452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 645 - 684
Target Start/End: Original strand, 33569715 - 33569755
Alignment:
| Q |
645 |
aatatggtggcatt-cacatgggaaaggtgaatcctttccc |
684 |
Q |
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| T |
33569715 |
aatatggtggcatttcacatgggaaaggtcaatcctttccc |
33569755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 10521 - 10435
Alignment:
| Q |
56 |
gtttggcagaaggagattttgatgggaggaaagtgtgagccgttggatttctccggtgtgatttactacgatattaacgggaaacag |
142 |
Q |
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| T |
10521 |
gtttggcagaaaacgatcttgatgggtgataagtgtgaaccgttggatttctctggtgtgatttattatgacaataaggggaaacag |
10435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 649 - 684
Target Start/End: Complemental strand, 39149518 - 39149482
Alignment:
| Q |
649 |
tggtggcatt-cacatgggaaaggtgaatcctttccc |
684 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
39149518 |
tggtggcatttcacatgggaaaggtgaatcctttccc |
39149482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 645 - 684
Target Start/End: Original strand, 9224261 - 9224301
Alignment:
| Q |
645 |
aatatggtggcatt-cacatgggaaaggtgaatcctttccc |
684 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||| |
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| T |
9224261 |
aatatggtggcatttcacatgggaaaggttaatcctttccc |
9224301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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