View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15934_low_4 (Length: 607)

Name: NF15934_low_4
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15934_low_4
NF15934_low_4
[»] chr4 (12 HSPs)
chr4 (18-595)||(25181042-25181619)
chr4 (18-185)||(25169254-25169421)
chr4 (18-211)||(25251807-25252000)
chr4 (53-113)||(24999199-24999259)
chr4 (53-113)||(7727743-7727803)
chr4 (65-113)||(25041616-25041664)
chr4 (54-113)||(24987851-24987910)
chr4 (45-110)||(25161083-25161148)
chr4 (46-113)||(25048490-25048557)
chr4 (54-111)||(25193119-25193176)
chr4 (250-283)||(25251738-25251771)
chr4 (247-283)||(25169477-25169513)
[»] chr3 (2 HSPs)
chr3 (46-111)||(9212605-9212670)
chr3 (53-113)||(8089432-8089492)
[»] chr6 (3 HSPs)
chr6 (53-113)||(29421030-29421090)
chr6 (53-92)||(29462162-29462201)
chr6 (53-113)||(29405162-29405222)


Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Original strand, 25181042 - 25181619
Alignment:
Q  18 tccattgtttccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcatattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25181042 tccattgtttccatcagtgattttttgaggatatctatgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcatattga 25181141  T
Q  118 tatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttgcaatggtgcagtgttaattatttctttacctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25181142 tatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttgcaatggtgcagtgttaattatttctttacctt 25181241  T
Q  218 ctgtaatgatgaatgttgaaactaaggataacaagagagaaaataggagatatctcatgtttaatgtcataagtgcttattttataattgcttttctggg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25181242 ctgtaatgatgaatgttgaaactaaggataacaagagagaaaataggagatatctcatgtttaatgtcataagtgcttattttataattgcttttgtggg 25181341  T
Q  318 ttaggtaaacaatgcaagcgagcgttgcttcttatataagaaagaaaattttttggtggcaggcttctattgcacatttttctagtcaaattaaatttca 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25181342 ttaggtaaacaatgcaagcgagcgttgcttcttatataagaaagaaaa-attttggtggcaggcttctattgcacatttttctagtcaaattaaatttca 25181440  T
Q  418 acacgcggttccttgtattgtatgagtcattannnnnnnngataatatctatgactcgttatttaattggactccctaacttaaattgattaattaannn 517  Q
    ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  25181441 acacgcggttccttgtattgtatgagtcattattttttttgataatatctatgactcgttatttaattggactccctaacttaaattgattaattaattt 25181540  T
Q  518 nnnnnncaagtaacatattcgttagaaattaacggtaaataaatagatg-ttgcgattcgaactgcaataatttagtat 595  Q
          |||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  25181541 ttttttcaagtaacatattcgttagaaatttacggtaaataaatagatgtttgcaattcgaactacaataatttagtat 25181619  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 25169254 - 25169421
Alignment:
Q  18 tccattgtttccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcatattga 117  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25169254 tccattgtttccatcactgattttttgaggatatctatgagtgaatgtatcccaaatacttggtcctcttccaccttcacttgctgcaccttcatattga 25169353  T
Q  118 tatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||    
T  25169354 tatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctattcaaagtacctatttg 25169421  T

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Target: chr4; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 25252000 - 25251807
Alignment:
Q  18 tccattgtttccatcagtgattttttgaggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcatattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25252000 tccattgtttccatcagtgattttttgaggatatctatgagtgaaagtatcccatatacttgctcctcttccaccttcacttgctgcaccttcatattga 25251901  T
Q  118 tatgcagaagatgctgtgccaaatataaagccttctgggaaatcatttctatttaatgaacctatttgcaatggtgcagtgttaattatttctt 211  Q
    ||||||||||||||||||||||| || |||||||| || ||||| || ||||| |||||||||| |||   ||| | ||| |||||||||||||    
T  25251900 tatgcagaagatgctgtgccaaagatgaagccttcaggaaaatctttcctattcaatgaacctacttgtggtggagtagtattaattatttctt 25251807  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 24999259 - 24999199
Alignment:
Q  53 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    ||||||| || ||||||||||||||||||||| |||||||||| ||| |||||||||||||    
T  24999259 tatgagtaaaggtatcccatatacttggtccttttccaccttctcttactgcaccttcata 24999199  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 7727803 - 7727743
Alignment:
Q  53 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    |||||||||| ||||||||||||||||| ||| | |||||||||  |||||||||||||||    
T  7727803 tatgagtgaaggtatcccatatacttggccctttgccaccttcatgtgctgcaccttcata 7727743  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 25041616 - 25041664
Alignment:
Q  65 tatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    |||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  25041616 tatcccatatactttgtcctcttccaccttcatttgcagcaccttcata 25041664  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 54 - 113
Target Start/End: Original strand, 24987851 - 24987910
Alignment:
Q  54 atgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||  |||||||||||||||    
T  24987851 atgagtgaaagtatcccaaatacttggtccttttccatcttcaaatgctgcaccttcata 24987910  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 25161083 - 25161148
Alignment:
Q  45 aggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttc 110  Q
    ||||||||||||||| || || |||||||||||||||  ||| ||||||||  |||||||||||||    
T  25161083 aggatatctatgagtaaaggtgtcccatatacttggtgttctaccaccttctgttgctgcaccttc 25161148  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 25048490 - 25048557
Alignment:
Q  46 ggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    |||||| |||||| ||| |||||||| |||||||||||| ||||| |||   ||||||||||||||||    
T  25048490 ggatatttatgagcgaaagtatcccaaatacttggtccttttccatctttttttgctgcaccttcata 25048557  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 25193119 - 25193176
Alignment:
Q  54 atgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttca 111  Q
    ||||||||| || ||||| |||||||||||||| ||||||||  || |||||||||||    
T  25193119 atgagtgaaggtgtcccagatacttggtcctctaccaccttcctttactgcaccttca 25193176  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 25251771 - 25251738
Alignment:
Q  250 aagagagaaaataggagatatctcatgtttaatg 283  Q
    |||||||||||||||| |||||||||||||||||    
T  25251771 aagagagaaaataggaaatatctcatgtttaatg 25251738  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 25169477 - 25169513
Alignment:
Q  247 aacaagagagaaaataggagatatctcatgtttaatg 283  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  25169477 aacaagagagaaaataggaaatatctcatgcttaatg 25169513  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 9212670 - 9212605
Alignment:
Q  46 ggatatctatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttca 111  Q
    |||||| |||| ||||| ||||||||||||||||||  ||| ||||||||| ||||||||||||||    
T  9212670 ggatatttatgggtgaaagtatcccatatacttggtgttctaccaccttcatttgctgcaccttca 9212605  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 8089492 - 8089432
Alignment:
Q  53 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    |||||||||| || |||||||| ||||| ||||| |||||||||  ||| |||||||||||    
T  8089492 tatgagtgaaggtgtcccatatgcttggacctctgccaccttcaaatgcagcaccttcata 8089432  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 29421090 - 29421030
Alignment:
Q  53 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    |||| ||||| ||||||||||||||||||||| |||||||   | ||||||||||||||||    
T  29421090 tatgcgtgaaagtatcccatatacttggtccttttccaccaatatttgctgcaccttcata 29421030  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 29462162 - 29462201
Alignment:
Q  53 tatgagtgaatgtatcccatatacttggtcctcttccacc 92  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  29462162 tatgtgtgaaagtatcccatatacttggtcctcttccacc 29462201  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 29405222 - 29405162
Alignment:
Q  53 tatgagtgaatgtatcccatatacttggtcctcttccaccttcacttgctgcaccttcata 113  Q
    |||||||| | | ||||||||| ||||||||||| |||||  || ||||||||||||||||    
T  29405222 tatgagtgtaagcatcccatatgcttggtcctctgccaccaacatttgctgcaccttcata 29405162  T

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