View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15934_low_5 (Length: 562)

Name: NF15934_low_5
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15934_low_5
NF15934_low_5
[»] chr1 (4 HSPs)
chr1 (14-546)||(7298525-7299068)
chr1 (13-223)||(47124620-47124835)
chr1 (181-214)||(6815264-6815297)
chr1 (181-214)||(28700026-28700059)
[»] chr4 (8 HSPs)
chr4 (13-223)||(11882857-11883067)
chr4 (13-223)||(33018498-33018715)
chr4 (15-223)||(33432739-33432946)
chr4 (19-153)||(35347139-35347273)
chr4 (175-224)||(35347298-35347347)
chr4 (181-217)||(23668224-23668260)
chr4 (182-218)||(52106253-52106289)
chr4 (172-223)||(23669246-23669297)
[»] chr8 (6 HSPs)
chr8 (13-159)||(34053192-34053338)
chr8 (172-222)||(34053125-34053175)
chr8 (172-223)||(9370102-9370153)
chr8 (181-214)||(9369095-9369128)
chr8 (181-214)||(9404158-9404191)
chr8 (181-214)||(9406319-9406352)
[»] chr3 (4 HSPs)
chr3 (13-160)||(47669101-47669248)
chr3 (13-220)||(12008925-12009142)
chr3 (13-152)||(51985886-51986024)
chr3 (172-223)||(51985799-51985850)
[»] chr6 (1 HSPs)
chr6 (13-221)||(6535137-6535350)
[»] chr7 (5 HSPs)
chr7 (13-148)||(26761474-26761608)
chr7 (190-223)||(26761390-26761423)
chr7 (172-224)||(47817419-47817471)
chr7 (182-218)||(41806607-41806643)
chr7 (181-217)||(47818448-47818484)
[»] chr5 (1 HSPs)
chr5 (37-223)||(43070065-43070260)
[»] chr2 (1 HSPs)
chr2 (181-214)||(11873284-11873317)


Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 14 - 546
Target Start/End: Original strand, 7298525 - 7299068
Alignment:
Q  14 caaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgat 113  Q
    |||| |||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||| || ||||||||||    
T  7298525 caaaaggagaaaaaacagagagggatattagagaaaggtgaaagctcatgagagttgagaaggaagaagacaaaggaaaatataattaagtgtatttgat 7298624  T
Q  114 ctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnn----------gaggtcatgcacggtaggagacctataaaggt 203  Q
    |||||||||||||||||||||||||||||||||||||||| || |||                     ||||||||||||||||||||||||||| ||||    
T  7298625 ctatggtgtgtttaaccaatctaacggttaggaaatgtcataacgtcaaaaaaaaaaaacaaaaaaaagaggtcatgcacggtaggagacctatataggt 7298724  T
Q  204 ctcccaccctaaacgccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatgaaaatcaattcttattgaaatcaccctaaataagtc 303  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7298725 ctcctaccctaaacgccgcctagtttcgatagtaaacttcaagtttgaatcaaattttaaaatcaaaatcaattcttattgaaatcaccctaaataagtc 7298824  T
Q  304 aaaattttgtgtatgaaatcacttttatctctatctaccttaaaaccaaa-tacacacctagacatagagaggacacagaaatcaagttgcaagttggca 402  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298825 aaaattttgtgtatgaaatcccttttatctctatctaccttaaaaccaaaatacacacctagacatagagaggacacagaaatcaagttgcaagttggca 7298924  T
Q  403 tgaaagcatgcctgtgactgtgtaatgtatcccatatccttatccttctttggcgctgctgtctgtatatggcagaatccttctctttctcagctacata 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7298925 tgaaagcatgcctgtgactgtgtaatgtatcccatatccttatccttctttggcgctgctgtctgtatatggcagaatccttctctttctcagctacata 7299024  T
Q  503 tcagactcagacagacctatgatagaagttatgcactttcttca 546  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  7299025 tcagactcagacagacctatgatagaagttatgcactttcttca 7299068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 47124835 - 47124620
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||| || ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  47124835 gcaaagagaaaataaacagagagggatattagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaggtgtatttga 47124736  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc-----nnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcc 207  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||| ||                |||||||||||| |||| ||| ||||||||||||||    
T  47124735 tctatggtgtgttcaaccaatctaacggttaggaaaggtctgaagatcaaaaaaaaaaaaaaaagaggtcatgcacagtagaagatctataaaggtctcc 47124636  T
Q  208 caccctaaacgccgcc 223  Q
    ||||||||||||||||    
T  47124635 caccctaaacgccgcc 47124620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 6815297 - 6815264
Alignment:
Q  181 cacggtaggagacctataaaggtctcccacccta 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  6815297 cacggtaggagacctatcaaggtctcccacccta 6815264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 28700026 - 28700059
Alignment:
Q  181 cacggtaggagacctataaaggtctcccacccta 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  28700026 cacggtaggagacctattaaggtctcccacccta 28700059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 11882857 - 11883067
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11882857 gcaaagggaaaataaacagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 11882956  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccaccc 212  Q
    ||||||||||||| |||||||||||||||||||||| ||| |||||||           |||| ||||||||||||||||||||||||||||||||||||    
T  11882957 tctatggtgtgttcaaccaatctaacggttaggaaaagtccgaaggtcaaaaaaaaaaagaggccatgcacggtaggagacctataaaggtctcccaccc 11883056  T
Q  213 taaacgccgcc 223  Q
    |||||||||||    
T  11883057 taaacgccgcc 11883067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 33018498 - 33018715
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33018498 gcaaagggaaaataaacagagagggatatcaaagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 33018597  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc-------nnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtct 205  Q
    |||||| |||||| ||||||||||||| || | ||| |||  ||||||                  ||||||||||||||||||||||||||||||||||    
T  33018598 tctatgatgtgttcaaccaatctaacgattggaaaaggtccaaaggtcaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtct 33018697  T
Q  206 cccaccctaaacgccgcc 223  Q
    ||||||||||||||||||    
T  33018698 cccaccctaaacgccgcc 33018715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 33432946 - 33432739
Alignment:
Q  15 aaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatc 114  Q
    ||||||| ||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||  | ||||||| |||    
T  33432946 aaagggaaaataaacagagagggatat-agagaaaggggaaagctcatgagagttgagagggaagaagacaaatgaaaagataattcagtgtatttaatc 33432848  T
Q  115 tatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtcnnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcccacccta 214  Q
    ||||||||||| ||||||||||||  ||||||||  || |||| ||            | |||||||||||||||||| |||||||||||||||||||||    
T  33432847 tatggtgtgttcaaccaatctaactattaggaaagatccgaagttcaaaaaaaaaaaaatgtcatgcacggtaggagatctataaaggtctcccacccta 33432748  T
Q  215 aacgccgcc 223  Q
    |||||||||    
T  33432747 aacgccgcc 33432739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 35347139 - 35347273
Alignment:
Q  19 ggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctatg 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||    
T  35347139 ggagaataaacagagagggatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaaaataatcaagtgtattcgatctatg 35347238  T
Q  119 gtgtgtttaaccaatctaacggttaggaaatgtca 153  Q
     |||||||||| ||| |||||||||| ||| ||||    
T  35347239 atgtgtttaactaatttaacggttagaaaaagtca 35347273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 35347298 - 35347347
Alignment:
Q  175 gtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 224  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| ||||    
T  35347298 gtcatgcacggtaggggacctataaaggtctcccaccctagacgcagcct 35347347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 23668260 - 23668224
Alignment:
Q  181 cacggtaggagacctataaaggtctcccaccctaaac 217  Q
    ||||||||||||||||| |||||||||||||||||||    
T  23668260 cacggtaggagacctattaaggtctcccaccctaaac 23668224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 52106253 - 52106289
Alignment:
Q  182 acggtaggagacctataaaggtctcccaccctaaacg 218  Q
    ||||||||||||||| |||||||||||||||||||||    
T  52106253 acggtaggagacctaaaaaggtctcccaccctaaacg 52106289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 23669246 - 23669297
Alignment:
Q  172 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 223  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  23669246 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 23669297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 135; Significance: 4e-70; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 34053338 - 34053192
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34053338 gcaaagggagaataaacagagagggatatcagagaaaggtaaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 34053239  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34053238 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggt 34053192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 34053175 - 34053125
Alignment:
Q  172 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgc 222  Q
    ||||| ||||| |||||||||||||||||||| |||||||||| |||||||    
T  34053175 gaggtaatgcatggtaggagacctataaaggtttcccaccctacacgccgc 34053125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 9370102 - 9370153
Alignment:
Q  172 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 223  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || |||||    
T  9370102 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcc 9370153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 9369128 - 9369095
Alignment:
Q  181 cacggtaggagacctataaaggtctcccacccta 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  9369128 cacggtaggagacctattaaggtctcccacccta 9369095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 9404191 - 9404158
Alignment:
Q  181 cacggtaggagacctataaaggtctcccacccta 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  9404191 cacggtaggagacctattaaggtctcccacccta 9404158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 9406352 - 9406319
Alignment:
Q  181 cacggtaggagacctataaaggtctcccacccta 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  9406352 cacggtaggagacctattaaggtctcccacccta 9406319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 7e-66; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 47669101 - 47669248
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  47669101 gcaaagggagaataaacagagaggaatatgagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 47669200  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc 160  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  47669201 tctctggtgtgtttaaccaatctaacggttaggaaatgtgagaaggtc 47669248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 12009142 - 12008925
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12009142 gcaaagggagaataaacagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaatataatcaagtgtatttga 12009043  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc----------nnnnnnnnnnngaggtcatgcacggtaggagacctataaagg 202  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||                     |||||||||||||||||||||||||||||||    
T  12009042 tctatggtgtgtttaaccaatctaacggttagaaaatgtcagaagatcaaaaaaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaagg 12008943  T
Q  203 tctcccaccctaaacgcc 220  Q
    ||||||||||||||||||    
T  12008942 tctcccaccctaaacgcc 12008925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 13 - 152
Target Start/End: Complemental strand, 51986024 - 51985886
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    |||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  51986024 gcaaagggagaataaacagagaggtatat-agagaaaggtgaaagctcatgagagttgagaggaaagaagacaaatgaaaagataatcaagtgtatttga 51985926  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtc 152  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  51985925 tctatggtatgtttaaccaatctaacggttaggaaatgtc 51985886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 51985850 - 51985799
Alignment:
Q  172 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 223  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  51985850 gaggtcatgtacggtaggagacctataaagatctcccaccctaaacaccgcc 51985799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 6535137 - 6535350
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6535137 gcaaagggaaaataaacagagagggatattagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 6535236  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaatgtcagaaggtc-----nnnnnnnnnnngaggtcatgcacggtaggagacctataaaggtctcc 207  Q
    ||| ||||||||| || |||||||||| |||||||| ||| |||||||                ||||||||||||||||||||||||||||||||||||    
T  6535237 tctgtggtgtgttcaatcaatctaacgattaggaaaggtccgaaggtcaaaaaaaaaaaaaaaagaggtcatgcacggtaggagacctataaaggtctcc 6535336  T
Q  208 caccctaaacgccg 221  Q
    ||||||||||||||    
T  6535337 caccctaaacgccg 6535350  T

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Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 26761608 - 26761474
Alignment:
Q  13 gcaaagggagaataaacagagagggatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttga 112  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26761608 gcaaagggagaataaacagagagggatat-agagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttga 26761510  T
Q  113 tctatggtgtgtttaaccaatctaacggttaggaaa 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  26761509 tctatggtgtgtttaaccaatctaacggttaggaaa 26761474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 190 - 223
Target Start/End: Complemental strand, 26761423 - 26761390
Alignment:
Q  190 agacctataaaggtctcccaccctaaacgccgcc 223  Q
    ||||||||||||||||||||||||||||||||||    
T  26761423 agacctataaaggtctcccaccctaaacgccgcc 26761390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 47817471 - 47817419
Alignment:
Q  172 gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcct 224  Q
    ||||| |||||| ||||||||||||| |||||||||||||||| || ||||||    
T  47817471 gaggttatgcaccgtaggagacctattaaggtctcccaccctagacaccgcct 47817419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 218
Target Start/End: Complemental strand, 41806643 - 41806607
Alignment:
Q  182 acggtaggagacctataaaggtctcccaccctaaacg 218  Q
    |||||||||||||||  ||||||||||||||||||||    
T  41806643 acggtaggagacctaagaaggtctcccaccctaaacg 41806607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 47818448 - 47818484
Alignment:
Q  181 cacggtaggagacctataaaggtctcccaccctaaac 217  Q
    ||||||||||||||| | |||||||||||||||||||    
T  47818448 cacggtaggagacctgttaaggtctcccaccctaaac 47818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 37 - 223
Target Start/End: Original strand, 43070065 - 43070260
Alignment:
Q  37 gatatcagagaaagatgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaaatgtatttgatctatggtgtgtttaaccaatcta 136  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  43070065 gatatcagagaaaggtgaaagctcatgagagttgagagggaagaagacaaatgaaaagataatcaagtgtatttgatctatgatgtgtttaaccaatcta 43070164  T
Q  137 acggttaggaaatgtcagaaggtcnnnnnnnnnnn---------gaggtcatgcacggtaggagacctataaaggtctcccaccctaaacgccgcc 223  Q
    |||||||||||| ||| ||||||                     ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43070165 acggttaggaaaggtccgaaggttaaaaaaaaaaaaaaaaaaaagaggtcatgtacggtaggagacctataaaggtctcccaccctaaacgccgcc 43070260  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 11873317 - 11873284
Alignment:
Q  181 cacggtaggagacctataaaggtctcccacccta 214  Q
    ||||||||||||||||| ||||||||||||||||    
T  11873317 cacggtaggagacctatcaaggtctcccacccta 11873284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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