View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_8 (Length: 422)
Name: NF15934_low_8
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 356508 - 356918
Alignment:
| Q |
1 |
ttgtgaaggagcaaaataggacaaatttgattttgtcaaatgaggagttgaatcaggaaaatagtgtccttagagacacc-----agggctttccagatt |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
356508 |
ttgtgaaggagcaaaataggacaaatttgattttgtcaaatgaggagttgaatcaggaaaatagtgtccttagagacaccccaccagggctttgcagatt |
356607 |
T |
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| Q |
96 |
ggtgtttcaaggaggatgtctttaccagccagcaatgttgtatcaatggaggcacctattgcctgcactgccatgtcattgacctctgataaaaggcttg |
195 |
Q |
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| T |
356608 |
ggtgtttcaaggaggatgtctttaccagccagcaatgttgtatcaatggaggcaactattgcctgcactgccatgtcattgacctctaataaaaggcttg |
356707 |
T |
|
| Q |
196 |
tgagttcctcccatgttgctttatctttcaaacctaatgtagcctttcagaagagtgagaacattttaaaggctttatggggagatttagtagagggagg |
295 |
Q |
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||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
356708 |
tgagttcctcccacgttgctttatctttcaaacctaatgaagcctttcagaagagtgagaacattttaaaggctttatggggagatttagtagagggagg |
356807 |
T |
|
| Q |
296 |
gagaccaaaataatattcaaacataggaaactcccaacactgttttggtcaccaaaaagcagaaaaaacatatcacacaagctaatcctgcggattcaga |
395 |
Q |
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| T |
356808 |
gagaccaaaataatatttaaacacaggaaactcccaacactgttttggtcaccaaaaagcagaaaaaacatatcacacaagctaatcatgcggattcaga |
356907 |
T |
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| Q |
396 |
gggcatcaaca |
406 |
Q |
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| T |
356908 |
gggcatcaaca |
356918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 403
Target Start/End: Original strand, 10582543 - 10582941
Alignment:
| Q |
9 |
gagcaaaataggacaaatttgattttgtcaaatgaggagttgaatcaggaaaatagtgtccttagagacaccagggctttccagattggtgtttcaagga |
108 |
Q |
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||||||| |||| |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||| |
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| T |
10582543 |
gagcaaacaaggagaaatttagttttgtcaaatgaggagttgtatcaggaaaatagtgtcattagagacaccagggctttgcagattggtgtttcaggga |
10582642 |
T |
|
| Q |
109 |
ggatgtctttaccag----ccagcaatgttgtatcaatggaggcacctattgcctgcactgccatgtcattgacctctgataaaaggcttgtgagttcct |
204 |
Q |
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||||||||||||||| |||||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| | |
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| T |
10582643 |
ggatgtctttaccagccagccagcaatattgtatcaacggcggcacctatttcctgcactgccatgtcattgacctctgataaaaggcctgtaagttctt |
10582742 |
T |
|
| Q |
205 |
cccatgttgctttatctttcaaacctaatgtagcctttcagaagagtgagaacattttaaaggctttatggggagatttagtagagggagggagaccaaa |
304 |
Q |
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| T |
10582743 |
cccatgttgctttatctttcacgcctaatgaagcctttcagaagagtgagaacattttaaaggctttatggggagatttagtagagggagggagaccaaa |
10582842 |
T |
|
| Q |
305 |
ataatattcaaacataggaaactcccaacactgttttggtcaccaaaaagcagaaaaaacatatcacacaagctaatcctgcggattcagagggcatca |
403 |
Q |
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| T |
10582843 |
ataatattcaaacacaggaaactcctaacactgttttggtcaccaaaaagcagtaaaatcacatcacacaagctaatcctgcggattcagagggcatca |
10582941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 38984442 - 38984514
Alignment:
| Q |
331 |
aacactgttttggtcaccaaaaagcagaaaaaacatatcacacaagctaatcctgcggattcagagggcatca |
403 |
Q |
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|||||||| |||||| | ||| | || | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38984442 |
aacactgtcttggtctctaaacaacatagaaaacatatcacacaagctaatcctgcggattcagagggcatca |
38984514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 16465468 - 16465546
Alignment:
| Q |
325 |
actcccaacactgttttggtcaccaaaaagcagaaaaaacatatcacacaagctaatcctgcggattcagagggcatca |
403 |
Q |
| |
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||||| |||||| | |||||| ||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
16465468 |
actccaaacactatcttggtctccaaacagcagaaaagacatatcacacaagcgaatcaggcggattcagagggcatca |
16465546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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