View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15934_low_9 (Length: 415)
Name: NF15934_low_9
Description: NF15934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15934_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 20 - 404
Target Start/End: Original strand, 52035787 - 52036167
Alignment:
| Q |
20 |
gtcgggagagaacttattatctgtgaagcttctacaatattagtatttgtcaacaaaataattcgaagtaattgacannnnnnnataggtgttcttgcaa |
119 |
Q |
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| T |
52035787 |
gtcgggagagaacttattatctgtgaagcttctacaatattagtatttgtaaacaaaataattcgaagtaattgatatttttt-atacgtgttcttgcaa |
52035885 |
T |
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| Q |
120 |
gttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccattatttaaccgttttc |
219 |
Q |
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| T |
52035886 |
gttgtttggataattgatgaaaagaatgaatgaaaaatgtaagaggatggaattgataaaccactcaatagattacattaaccatt---taaccgttttc |
52035982 |
T |
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| Q |
220 |
tgtgggaacaggggatgcctcaacattaggcaaggcaactactgttgttagtctgtttgagattctatacagcaagtaaacaataattgcgaatgctaat |
319 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52035983 |
tgtgggaacaggggatgcctcaacataaggcaaggcaactactgttgttagtctgtttgagattctatacaacaagtaaacaataattgcgaatgctaat |
52036082 |
T |
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| Q |
320 |
taagttcacaacaacgagcaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
404 |
Q |
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| T |
52036083 |
taagttcacaacaacgaccaattgcatttattccatttaataagaatctctattggtgttgcacaaattcactatacacaggttc |
52036167 |
T |
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