View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15935_high_4 (Length: 376)

Name: NF15935_high_4
Description: NF15935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15935_high_4
NF15935_high_4
[»] chr5 (17 HSPs)
chr5 (10-373)||(30060626-30060989)
chr5 (10-373)||(30749900-30750263)
chr5 (13-373)||(30400331-30400691)
chr5 (13-362)||(29853579-29853928)
chr5 (57-362)||(30436084-30436389)
chr5 (57-362)||(30712958-30713263)
chr5 (13-362)||(29872442-29872791)
chr5 (66-343)||(30483688-30483965)
chr5 (57-343)||(30338058-30338344)
chr5 (16-343)||(30241873-30242194)
chr5 (16-373)||(30206779-30207136)
chr5 (57-215)||(30676821-30676979)
chr5 (62-348)||(30475657-30475943)
chr5 (62-302)||(30521163-30521403)
chr5 (62-302)||(30561503-30561743)
chr5 (148-355)||(17983182-17983389)
chr5 (62-118)||(17983410-17983466)
[»] chr7 (1 HSPs)
chr7 (19-343)||(26707619-26707943)
[»] chr4 (3 HSPs)
chr4 (19-362)||(20296077-20296420)
chr4 (16-354)||(52352235-52352573)
chr4 (62-351)||(13616876-13617164)
[»] chr1 (2 HSPs)
chr1 (16-355)||(7581211-7581550)
chr1 (16-355)||(7099696-7100035)
[»] chr3 (1 HSPs)
chr3 (201-357)||(25293601-25293757)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 30060989 - 30060626
Alignment:
Q  10 tcgaagaatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagc 109  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30060989 tcgaacaatatgcatttggacatcacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgcaatggattgcctcttgcagc 30060890  T
Q  110 aaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060889 aaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccatt 30060790  T
Q  210 ttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaagg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30060789 ttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaagg 30060690  T
Q  310 aagaattgatttggctttggatggccaatggattgatttcatctaggggtaatacggaggttga 373  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  30060689 aagaattgatttggctttggatggctaatggattgatttcatctaggggtactacggaggttga 30060626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 30750263 - 30749900
Alignment:
Q  10 tcgaagaatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagc 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750263 tcgaacaatatgcatttggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagc 30750164  T
Q  110 aaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccatt 209  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30750163 aaaagcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagatagtgaactttgggatttatcagatgaaaattccatt 30750064  T
Q  210 ttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaagg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750063 ttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaagg 30749964  T
Q  310 aagaattgatttggctttggatggccaatggattgatttcatctaggggtaatacggaggttga 373  Q
    || |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  30749963 aaaaattgatttggctttggatggctaatggattgatttcatctaggggtaatatggaggttga 30749900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 30400691 - 30400331
Alignment:
Q  13 aagaatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaa 112  Q
    ||||||||||||| |||||||| | |||||||||||| || || || | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30400691 aagaatatgcattgggacattatagagaagagcgtgcagaacttgtagcaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaa 30400592  T
Q  113 atcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttg 212  Q
    | |||||||| |||| |||| ||||||||| |  ||||||||||||||| | |||||||||| ||| ||||||| |||| |||| |||||||  ||||||    
T  30400591 agcattgggaggtttgatgagctcaaggaatggagaaaaggaatggcttgatattaaagacactgagctttgggctttaccagaagaaaattatattttg 30400492  T
Q  213 cctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaag 312  Q
    | | |||||||||||||||||||||||||| |  |  ||||||| |||||||||||||||||||||||||||||||| |||   |||||| | || ||||    
T  30400491 cgttctttgaggttgagttacttttatttaacaccgaccctaaagcaatgtttctctttttgtgctatatttcccaaggatagggaaatcttgaaagaag 30400392  T
Q  313 aattgatttggctttggatggccaatggattgatttcatctaggggtaatacggaggttga 373  Q
    ||||||||  |||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  30400391 aattgattcagctttggatggctaatggattgatttcatcttggggtaatacggaggttga 30400331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 29853928 - 29853579
Alignment:
Q  13 aagaatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaa 112  Q
    ||||||||||||||||| ||| || |||||||| | |  | || |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29853928 aagaatatgcatttggatatttcagagaagagcatacaaagcttgtggaaataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcaaa 29853829  T
Q  113 atcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttg 212  Q
    | |||||||| |||| |||| ||||||||| || ||||||||||||||| | |||||||||||||| ||||||| |||| || | |||||||| ||||||    
T  29853828 aacattgggaggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttg 29853729  T
Q  213 cctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaag 312  Q
    | |||||||||||||||||||||||||||| |  || ||||||||||||||||||| ||||| |||||||||||||| |||| ||||||||| || ||||    
T  29853728 cttgctttgaggttgagttacttttatttaacaccaaccctaaaacaatgtttctccttttgcgctatatttcccaaggatggagaaatcctgaaagaag 29853629  T
Q  313 aattgatttggctttggatggccaatggattgatttcatctaggggtaat 362  Q
    ||||||||   ||||||||||| |||||||| |||||||||| |||||||    
T  29853628 aattgattcaactttggatggctaatggatttatttcatctaagggtaat 29853579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 57 - 362
Target Start/End: Complemental strand, 30436389 - 30436084
Alignment:
Q  57 gtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat 156  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||||| || ||||||||||    
T  30436389 gtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaaggaat 30436290  T
Q  157 ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa 256  Q
    ||||| | |||||||||||||| ||||||| |||| || | |||||||| |||||||| |||||||| |||||||||||||||||| |  || |||||||    
T  30436289 ggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcccgctttgagattgagttacttttatttaacaccaaccctaaa 30436190  T
Q  257 acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggccaatggattgatttcatctagg 356  Q
     |||||||||||||||||||||||||||||||| |||  |||||||||||| |||||||||||| | ||||||||||| |||| ||| |||||||||| |    
T  30436189 gcaatgtttctctttttgtgctatatttcccaaggatagagaaatcctaaaagaagaattgattcgactttggatggctaatgaatttatttcatctatg 30436090  T
Q  357 ggtaat 362  Q
    ||||||    
T  30436089 ggtaat 30436084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 57 - 362
Target Start/End: Original strand, 30712958 - 30713263
Alignment:
Q  57 gtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat 156  Q
    |||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||  |||| |||| ||||||||| || ||||| ||||    
T  30712958 gtggaaataggaaaggagatagcaaagaaatgtaatggattgccacttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaatgaat 30713057  T
Q  157 ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa 256  Q
    ||||| | |||||||||||||| ||||||| |||| || | |||||||| |||||||||||||||||| ||||||||||||||||| |  || |||||||    
T  30713058 ggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcctgctttgaggctgagttacttttatttatcaccaaccctaaa 30713157  T
Q  257 acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggccaatggattgatttcatctagg 356  Q
     |||||||||||||||||||||||||||||||| |||  |||||||||||| |||||||||||| | ||||||||||| |||||||| |||||||||| |    
T  30713158 gcaatgtttctctttttgtgctatatttcccaaggatagagaaatcctaaaagaagaattgattcgactttggatggctaatggatttatttcatctatg 30713257  T
Q  357 ggtaat 362  Q
    ||||||    
T  30713258 ggtaat 30713263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 13 - 362
Target Start/End: Complemental strand, 29872791 - 29872442
Alignment:
Q  13 aagaatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaa 112  Q
    ||||||||||||||||| |||||| |||||||| | |  | ||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29872791 aagaatatgcatttggatattacagagaagagcatacaaagcttatggaaataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcaaa 29872692  T
Q  113 atcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttg 212  Q
    | |||||||| |||| |||| ||||||||| || ||||||||||||||| | ||||| |||||||| ||||||| ||||||  | |||||||| ||||||    
T  29872691 agcattgggaggtttgatgagctcaaggaatgaagaaaaggaatggcttgatattaaggacagtgagctttgggctttatcgcaagaaaattctattttg 29872592  T
Q  213 cctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaag 312  Q
    | |||||||||||||||||||||||||||| |  || ||||||| ||||||||||||||||| |||||||||||||| |||  | ||||||| || ||||    
T  29872591 cttgctttgaggttgagttacttttatttaacaccaaccctaaagcaatgtttctctttttgcgctatatttcccaaggatagaaaaatcctgaaagaag 29872492  T
Q  313 aattgatttggctttggatggccaatggattgatttcatctaggggtaat 362  Q
    ||||||||   ||||||||||| |||| ||| |||||||||| |||||||    
T  29872491 aattgattcaactttggatggctaatgaatttatttcatctatgggtaat 29872442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 66 - 343
Target Start/End: Complemental strand, 30483965 - 30483688
Alignment:
Q  66 ggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaa 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||  ||||| ||| || ||||||||||||||| | |    
T  30483965 ggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgata 30483866  T
Q  166 ttaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgttt 265  Q
    ||||||||||||| |||||||||||| || ||||||| || ||||| |||||||||||||||||||||||||||||| |  || ||||||| ||||||||    
T  30483865 ttaaagacagtgagctttgggatttaccacatgaaaaatctattttacctgctttgaggttgagttacttttatttaacaccaaccctaaagcaatgttt 30483766  T
Q  266 ctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggccaatggatt 343  Q
    ||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||  |||||||||||| ||||||||    
T  30483765 ctccttttgtgctatatttcccaaagatagagaaatcctgaaggaagaattgattcagctttggatggctaatggatt 30483688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 57 - 343
Target Start/End: Original strand, 30338058 - 30338344
Alignment:
Q  57 gtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat 156  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||  ||||| ||| || ||||||||||    
T  30338058 gtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaat 30338157  T
Q  157 ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa 256  Q
    ||||| | |||||||||||||| |||||||||||| || ||||||| || ||||| ||||||||||| |||||||||||||||||| |  || |||||||    
T  30338158 ggcttgatattaaagacagtgagctttgggatttaccacatgaaaaatctattttacctgctttgagtttgagttacttttatttaacaccaaccctaaa 30338257  T
Q  257 acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggccaatggatt 343  Q
     ||||||||||| ||||||||||||||||||||||||  ||||||||| |||||||||||||||   ||||||||||| ||||||||    
T  30338258 gcaatgtttctccttttgtgctatatttcccaaagatagagaaatcctgaaggaagaattgattcaactttggatggctaatggatt 30338344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 30241873 - 30242194
Alignment:
Q  16 aatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatc 115  Q
    ||||||||||||||||||| | ||||||| || |  | || |||  ||||||||||||||| |||||||||||||||||||||||||||||||| ||| |    
T  30241873 aatatgcatttggacattatagagaagagagtacaaagcttgtgaaaataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcgaaagc 30241972  T
Q  116 attgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcct 215  Q
    ||||||| ||||||||| ||||||||| || ||| ||||||||||| |||||||||| || || |||||||  ||  || | ||||      ||||||||    
T  30241973 attgggaggtttaatgagctcaaggaatgaagaagaggaatggcttgaaattaaagatagcgagctttgggccttgccacaagaaa------ttttgcct 30242066  T
Q  216 gctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaat 315  Q
    ||||||||||||||||||||||||||| |  || | ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  30242067 gctttgaggttgagttacttttatttaacaccaactctaaaacaatgtttctctttttgtgctatatttcccaaagatggagaaatcctgaaggaagaat 30242166  T
Q  316 tgatttggctttggatggccaatggatt 343  Q
    |||||  ||| || ||||| ||||||||    
T  30242167 tgattcagctctgaatggctaatggatt 30242194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 373
Target Start/End: Complemental strand, 30207136 - 30206779
Alignment:
Q  16 aatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatc 115  Q
    ||||||||||||||||  | | |||||||||||| || || |||| |||||||||||||||||||||||||||| |||||||||||||||||||| || |    
T  30207136 aatatgcatttggacaaaatagagaagagcgtgcagagcttgtggaaataggaaaggagatagtaaagaaatgtgatggattgcctcttgcagcacaagc 30207037  T
Q  116 attgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcct 215  Q
    ||||||| || ||||||  |||||||| || ||||| ||||||||| |||||||||| ||||||||||||| |||| || |||| ||||  ||||| |||    
T  30207036 attgggaggtctaatgagttcaaggaatgaagaaaaagaatggcttgaaattaaagagagtgaactttgggctttaccacatgagaattatattttacct 30206937  T
Q  216 gctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaat 315  Q
    |||||||||||||| |||||| ||||| |  || || |||| |  |||||| ||||||||||||| |||||||||||| ||||| || | | ||||||||    
T  30206936 gctttgaggttgagctactttcatttaactccaaccttaaagcggtgtttcgctttttgtgctatgtttcccaaagatacagaattcgtgagggaagaat 30206837  T
Q  316 tgatttggctttggatggccaatggattgatttcatctaggggtaatacggaggttga 373  Q
    |||||   ||||||||||| |||| ||| |||| ||||||||  |||| |||||||||    
T  30206836 tgattcatctttggatggctaatgaatttattttatctagggaaaatatggaggttga 30206779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 215
Target Start/End: Original strand, 30676821 - 30676979
Alignment:
Q  57 gtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat 156  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||||| || || |||||||    
T  30676821 gtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagagaaggaat 30676920  T
Q  157 ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcct 215  Q
    ||||| | |||||||||||||| ||||||| |||| || |  ||||||| |||||||||    
T  30676921 ggcttgatattaaagacagtgagctttgggctttaccacaaaaaaattctattttgcct 30676979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 62 - 348
Target Start/End: Complemental strand, 30475943 - 30475657
Alignment:
Q  62 aataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt 161  Q
    |||||| |||| |||||||||||| |||   |||||||||||||||||| || |||||||| || |||||  ||||||||  |||||||| |||||||||    
T  30475943 aataggtaaggcgatagtaaagaagtgtggaggattgcctcttgcagcacaagcattgggaggtctaatgcgctcaaggagtgatgaaaatgaatggctt 30475844  T
Q  162 aaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat 261  Q
     |||||||||||||| | || |||   ||| || |||| |||||||||||||| || |||||||| || |||||| ||||| |  |  || |||| |  |    
T  30475843 gaaattaaagacagtaatctctggaccttaccatatgagaattccattttgccagccttgaggttaagctactttcatttaacaccgaccttaaagcggt 30475744  T
Q  262 gtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggccaatggattgattt 348  Q
    ||||  |||||||||| |||||||||||||||   |||||  |||||||||| ||||||   || ||||||| ||||||||| ||||    
T  30475743 gttttgctttttgtgcgatatttcccaaagatatggaaattgtaaaggaagatttgattcatctatggatgggcaatggatttattt 30475657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 302
Target Start/End: Original strand, 30521163 - 30521403
Alignment:
Q  62 aataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt 161  Q
    ||||||||| |||||||||||||| |||   |||||||||||||||||| || |||||||| |  |||||  ||||||||  |  ||||| |||||||||    
T  30521163 aataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggctt 30521262  T
Q  162 aaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat 261  Q
     |||||||||| ||     |||||  |||| |  |||| ||||| |||||||||||||| |||||||| |||||| |||||    || || |||||||||    
T  30521263 gaaattaaagatagcaggatttggtctttaccgaatgagaattctattttgcctgctttaaggttgagctactttcatttaaacccaaccttaaaacaat 30521362  T
Q  262 gtttctctttttgtgctatatttcccaaagatgcagaaatc 302  Q
    ||||| |||||||||| || ||||||||||||  |||||||    
T  30521363 gtttcactttttgtgccatgtttcccaaagatatagaaatc 30521403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 62 - 302
Target Start/End: Original strand, 30561503 - 30561743
Alignment:
Q  62 aataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt 161  Q
    ||||||||| |||||||||||||| |||   |||||||||||||||||| || |||||||| |  |||||  ||||||||  |  ||||| |||||||||    
T  30561503 aataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggctt 30561602  T
Q  162 aaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat 261  Q
     |||||||||| ||     |||||  |||| |  |||| ||||| |||||||||||||| |||||||| |||||| |||||    || || |||||||||    
T  30561603 gaaattaaagatagcaggatttggtctttaccgaatgagaattctattttgcctgctttaaggttgagctactttcatttaaacccaaccttaaaacaat 30561702  T
Q  262 gtttctctttttgtgctatatttcccaaagatgcagaaatc 302  Q
    ||||| |||||||||| || ||||||||||||  |||||||    
T  30561703 gtttcactttttgtgccatgtttcccaaagatatagaaatc 30561743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 148 - 355
Target Start/End: Complemental strand, 17983389 - 17983182
Alignment:
Q  148 aaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggc 247  Q
    ||||||||||| || |||||||||| || || || |||| |||| |  |||| ||||| ||||| || ||| | |||||||| |||||| ||||| |  |    
T  17983389 aaaaggaatggtttgaaattaaagagagcgagctctgggctttaccgcatgagaattctattttcccagctctaaggttgagctactttcatttatcacc 17983290  T
Q  248 agccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggccaatggattgatt 347  Q
    | || |||||||||||||| ||||||||||||||||||||||||| ||||||||| | || |||||| | |||   ||||||||||| |||  ||| ||     
T  17983289 aaccttaaaacaatgtttcgctttttgtgctatatttcccaaagaagcagaaatcatgaaagaagaactaattcatctttggatggctaataaatttatc 17983190  T
Q  348 tcatctag 355  Q
    ||||||||    
T  17983189 tcatctag 17983182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 17983466 - 17983410
Alignment:
Q  62 aataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcatt 118  Q
    |||||| |||||||||||||| || |||   ||||||||||||||||||||| ||||    
T  17983466 aataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcaaaagcatt 17983410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 343
Target Start/End: Complemental strand, 26707943 - 26707619
Alignment:
Q  19 atgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcatt 118  Q
    |||||||| ||||||||| |||||||| | |  | || |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||    
T  26707943 atgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaaaaaatgtaatggattacctcttgcagcaaaagcatt 26707844  T
Q  119 gggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgct 218  Q
    |||| ||||||||  ||||| ||| || ||||||||||||||| | |||||||||||||| |||||||||||| || | ||||| || ||||||||||||    
T  26707843 gggaggtttaatgttctcaatgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttaccacaagaaaaatctattttgcctgct 26707744  T
Q  219 ttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattga 318  Q
    |||||||||||||||||||||||| |  || ||||||| ||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||    
T  26707743 ttgaggttgagttacttttatttaacaccaaccctaaagcaatgtttctctttttgtgctatatttcccaaagatagagaaatcttgaaggaagaattga 26707644  T
Q  319 tttggctttggatggccaatggatt 343  Q
    ||   ||||||||||| ||||||||    
T  26707643 ttcaactttggatggctaatggatt 26707619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 20296077 - 20296420
Alignment:
Q  19 atgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcatt 118  Q
    |||||||| ||||||||| |||||||| | |  | || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20296077 atgcatttagacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcatt 20296176  T
Q  119 gggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgct 218  Q
    |||| ||||||||  ||||| ||| || ||||||||||||| | | |||||||||| ||| ||||||| |||| || | ||||| || ||||||||||||    
T  20296177 gggaggtttaatggtctcaatgaatgaagaaaaggaatggcgtgatattaaagacaatgacctttgggctttaccacaagaaaaatctattttgcctgct 20296276  T
Q  219 ttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattga 318  Q
    |||||| ||||||||||||||||| |  || | ||||| ||||||||||||||||||||||||||||| || |||  ||||||| | || ||||||||||    
T  20296277 ttgaggctgagttacttttatttaacaccaactctaaagcaatgtttctctttttgtgctatatttcctaaggatagagaaatcttgaaagaagaattga 20296376  T
Q  319 tttggctttggatggccaatggattgatttcatctaggggtaat 362  Q
    ||  |||||||||||| |||||||| |||||||||| |||||||    
T  20296377 ttcagctttggatggctaatggattaatttcatctatgggtaat 20296420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 52352573 - 52352235
Alignment:
Q  16 aatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatc 115  Q
    |||||||||||| |||| | | |||||| || |  || || |||| |||||| || | |||||||||||| |||   |||||||||||||| ||| || |    
T  52352573 aatatgcatttgaacatgatatagaagaacgagaagagctagtggcaataggcaaagcgatagtaaagaagtgtgggggattgcctcttgctgcacaagc 52352474  T
Q  116 attgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcct 215  Q
    ||| ||| || |||||  |||||| || |  |||||||||||| || |||||||||| ||  | ||||||  |||||||||||| ||||| |||||||||    
T  52352473 attaggaggtctaatgcgctcaagaaatggagaaaaggaatgggttgaaattaaagagagcaagctttggtctttatcagatgagaattctattttgcct 52352374  T
Q  216 gctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaat 315  Q
    || |||||||||||||| ||  ||||| || || || ||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||| || || |    
T  52352373 gccttgaggttgagttatttccatttaacgtcaaccttaaaacaatgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatt 52352274  T
Q  316 tgatttggctttggatggccaatggattgatttcatcta 354  Q
    |||||   || ||||||||||||||||| ||||| ||||    
T  52352273 tgattcatctctggatggccaatggatttatttcgtcta 52352235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 351
Target Start/End: Complemental strand, 13617164 - 13616876
Alignment:
Q  62 aataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt 161  Q
    |||||||||||||||||| || || |||   |||||||||||||||| | || |||||||   | ||||  |||| ||||  |  ||||||||||||  |    
T  13617164 aataggaaaggagatagttaaaaagtgtggaggattgcctcttgcaggacaagcattggggtctctaatacactcgaggagtggagaaaaggaatggtgt 13617065  T
Q  162 aaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat 261  Q
     |||||| ||| || || ||||||||||||    |||| ||||| ||||| |||| ||||||| ||||||||||  ||||| || || || | |||||||    
T  13617064 gaaattagagagagcgagctttgggatttacggtatgagaattctatttttcctgatttgaggctgagttacttc-atttatcgccaacctttaaacaat 13616966  T
Q  262 gtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggccaatggattgatttcat 351  Q
    | ||| |||| |||| | ||||||| |||||| || |||||  ||||||||||||||||   ||||||||||| |||| ||| |||||||    
T  13616965 gattcgctttctgtgttgtatttcctaaagatacaaaaatcacaaaggaagaattgattcatctttggatggctaatgaatttatttcat 13616876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 16 - 355
Target Start/End: Original strand, 7581211 - 7581550
Alignment:
Q  16 aatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatc 115  Q
    ||||||||||||||||| | | ||||||| |||| || || |||| |||||| |||||||||||||| ||||||   |||||||||||||||||| || |    
T  7581211 aatatgcatttggacatgatagagaagagagtgcagagcttgtggcaataggcaaggagatagtaaaaaaatgtgcgggattgcctcttgcagcacaagc 7581310  T
Q  116 attgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcct 215  Q
    ||||||  || ||||| |||||||||  || |||||||||||| || |||||||||| || || |||||||||||| |  |||| ||||| | ||||||     
T  7581311 attggggtgtctaatgcactcaaggagtgaagaaaaggaatggtttgaaattaaagagagcgagctttgggatttaccgcatgagaattctactttgcca 7581410  T
Q  216 gctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaat 315  Q
    ||| |||| ||||| |||||| ||||| |  || || |||||||||||||| ||||||||||||||||||| |||||| || ||||| | ||||||||||    
T  7581411 gctctgagattgagctactttcatttatcaccaaccttaaaacaatgtttcgctttttgtgctatatttcctaaagatacaaaaatcatgaaggaagaat 7581510  T
Q  316 tgatttggctttggatggccaatggattgatttcatctag 355  Q
    |||||   ||||||||||| |||| ||| |||||||||||    
T  7581511 tgattcatctttggatggctaatgaatttatttcatctag 7581550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 7100035 - 7099696
Alignment:
Q  16 aatatgcatttggacattacaaagaagagcgtgctgatctcgtggtaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaatc 115  Q
    ||||||||||||||||||||| ||||||||||||||| || |||  |||||| |||||||||||||| || |||   |||||||||||||||||| || |    
T  7100035 aatatgcatttggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcacaagc 7099936  T
Q  116 attgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcct 215  Q
    ||| ||  || ||||| | ||||| |  || ||||| | |||| |  |||||||||| |||||  | |||| |||| |  | || ||||| ||||||||     
T  7099935 attagggtgtctaatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttaccgcacgagaattctattttgcca 7099836  T
Q  216 gctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaat 315  Q
    |||||||||||||| |||||  ||||| |  || || |||||||||||||| |||||||||||||||||| ||||||| || ||||| | ||||||||||    
T  7099835 gctttgaggttgagctacttccatttatcaccaaccttaaaacaatgtttcgctttttgtgctatatttcgcaaagatacaaaaatcatgaaggaagaat 7099736  T
Q  316 tgatttggctttggatggccaatggattgatttcatctag 355  Q
    |||||   ||||||||||| |||||||| |||||||||||    
T  7099735 tgattcatctttggatggctaatggatttatttcatctag 7099696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 201 - 357
Target Start/End: Original strand, 25293601 - 25293757
Alignment:
Q  201 aattccattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaa 300  Q
    ||||| ||||| ||| | ||| ||||||| |||||||||||| |  |  || |||| | ||||||  ||||||||||||| ||||| |||||| || |||    
T  25293601 aattctatttttccttccttgtggttgagctacttttatttaactccgaccttaaagcgatgttttgctttttgtgctatgtttccaaaagatacaaaaa 25293700  T
Q  301 tcctaaaggaagaattgatttggctttggatggccaatggattgatttcatctaggg 357  Q
    ||   ||||||||||||| |   ||||||||||| |||||||| |||||||||||||    
T  25293701 tcgataaggaagaattgactcatctttggatggctaatggatttatttcatctaggg 25293757  T

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