View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15935_high_5 (Length: 367)
Name: NF15935_high_5
Description: NF15935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15935_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 18458129 - 18457857
Alignment:
| Q |
1 |
ttcctttgcattaaaagctatactttaagtgcatgatcggacctataataagtttgacaaaattacggtgagcttatgctattctagtaaaaattgcact |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
18458129 |
ttcctttgcattaaaagctataatttaagtgcatgatcggacctataataagtttgacaaaattacggtgagcttatgctattctagtaaaagttacact |
18458030 |
T |
|
| Q |
101 |
ttgaagctgc-aacaaaataacaaaagctataacgaaacacattatctcatgttattgtatcttgatatatagctttatatatgtagnnnnnnnnnnnnn |
199 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
18458029 |
ttgaagctgcaaacaaaataacaaaagatataacgaaacacattatctcatgttattgtatcttgatatatagc--tatatatgtag------aaaaaaa |
18457938 |
T |
|
| Q |
200 |
nnnnnnnnccatgtgagttgtgcattccttctacaatgacactattactcacatgttgaagtagagtgtaattattaaagc |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18457937 |
aataaaaaccatgtgagttgtgcattccttctacaatgacactattactcacatgttgaagtagagtgtaattattgaagc |
18457857 |
T |
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