View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15935_low_1 (Length: 618)

Name: NF15935_low_1
Description: NF15935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15935_low_1
NF15935_low_1
[»] chr7 (3 HSPs)
chr7 (129-309)||(3270423-3270605)
chr7 (1-132)||(3270897-3271028)
chr7 (412-453)||(10054159-10054200)
[»] chr5 (3 HSPs)
chr5 (392-492)||(24131458-24131558)
chr5 (410-491)||(7742091-7742171)
chr5 (99-165)||(17017049-17017115)
[»] chr6 (2 HSPs)
chr6 (400-464)||(9395809-9395873)
chr6 (411-469)||(16440190-16440248)
[»] chr4 (1 HSPs)
chr4 (410-470)||(25367065-25367125)
[»] chr1 (2 HSPs)
chr1 (99-171)||(27415583-27415655)
chr1 (305-379)||(22666630-22666704)
[»] chr3 (1 HSPs)
chr3 (410-463)||(21828436-21828489)
[»] chr8 (1 HSPs)
chr8 (433-564)||(28259675-28259805)
[»] chr2 (1 HSPs)
chr2 (440-492)||(21847648-21847700)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 129 - 309
Target Start/End: Complemental strand, 3270605 - 3270423
Alignment:
Q  129 tttaggaccgaccctaacggactttgggttttatcggatcgggttaaaagccttgttttaaaatgggctctaaaaatactacatgagcccgaccctatac 228  Q
    ||||||||| |||||||| | |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  3270605 tttaggacctaccctaacaggctttgggttttaacgggtcgggttaaaagccttgttttaaaacgggctctaaaaatactacctgagcccgaccctatac 3270506  T
Q  229 gggttgtaggctaaacgggtcagtccgtcatatatttaaaacaa--aatattgtttcctctaataacaagaaaaccaattata 309  Q
    |||||||||||||||||| |||||||||||||||||||||| ||  || ||| ||||||||| ||||||||||||||||||||    
T  3270505 gggttgtaggctaaacggatcagtccgtcatatatttaaaaaaaataaaattatttcctctagtaacaagaaaaccaattata 3270423  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 3271028 - 3270897
Alignment:
Q  1 tccaatattatagactcctaatacgaaatgcggcatattatttttcattaatatttagataacactattgtattgtggtataatacaatggttattggta 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  3271028 tccaacattatagactcctaatacgaaatgcggcatattatttttcattaatatttagataacactattgtgttgtggtataatacaatgtctattggta 3270929  T
Q  101 gagcttttaaaacggactgctcgacccgttta 132  Q
    ||||||| |||||||||||||| |||||||||    
T  3270928 gagctttcaaaacggactgctcaacccgttta 3270897  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 453
Target Start/End: Complemental strand, 10054200 - 10054159
Alignment:
Q  412 agtaaattgattattttcgaaattaacttcttttaattgaat 453  Q
    ||||||||| |||||||| ||||||| |||||||||||||||    
T  10054200 agtaaattgcttattttctaaattaatttcttttaattgaat 10054159  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 392 - 492
Target Start/End: Original strand, 24131458 - 24131558
Alignment:
Q  392 cttcgtctgaacatgactgtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgttagagttttgactgatcttaaggg 491  Q
    ||||||| ||||| |||  |||||||||| |||||||| |||||||  ||||||||||||||||| ||||| || ||||  |||||||| ||||||||||    
T  24131458 cttcgtccgaacaagacattagtaaattgtttattttcaaaattaatctcttttaattgaatctaagtatgctttttaggattttgactcatcttaaggg 24131557  T
Q  492 g 492  Q
    |    
T  24131558 g 24131558  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 491
Target Start/End: Complemental strand, 7742171 - 7742091
Alignment:
Q  410 gtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgttagagttttgactgatcttaaggg 491  Q
    ||||||||||| ||| |||| ||||||| || |||| |||||||||| |||||||| |||| ||||||||| ||||||||||    
T  7742171 gtagtaaattgcttaatttctaaattaaattattttcattgaatctaagtatgatt-ttagggttttgactcatcttaaggg 7742091  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 17017115 - 17017049
Alignment:
Q  99 tagagcttttaaaacggactgctcgacccgtttaggaccgaccctaacggactttgggttttatcgg 165  Q
    ||||||| | ||||||||| || ||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  17017115 tagagctgtcaaaacggacggcccgacccgtttaggtccggccctaacgggcttcgggttttatcgg 17017049  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 9395873 - 9395809
Alignment:
Q  400 gaacatgactgtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgat 464  Q
    ||||| ||| ||||||| |||||||||||| ||| |||  ||||||||||||||||| |||||||    
T  9395873 gaacaagacagtagtaatttgattattttctaaaataatctcttttaattgaatctaagtatgat 9395809  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 469
Target Start/End: Original strand, 16440190 - 16440248
Alignment:
Q  411 tagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgtta 469  Q
    |||||||||| ||||||||  |||||| ||||||||||||| |||| |||| |||||||    
T  16440190 tagtaaattgcttattttcttaattaatttcttttaattgattctaagtatcattgtta 16440248  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 470
Target Start/End: Original strand, 25367065 - 25367125
Alignment:
Q  410 gtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatgattgttag 470  Q
    ||||||||||  |||||||| ||||||| ||||||||||||||| |  |||||||||||||    
T  25367065 gtagtaaattacttattttctaaattaatttcttttaattgaatatgagtatgattgttag 25367125  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 27415655 - 27415583
Alignment:
Q  99 tagagcttttaaaacggactgctcgacccgtttaggaccgaccctaacggactttgggttttatcggatcggg 171  Q
    ||||||| | ||||||||| |  |||||||||||||||||  |||||||| ||| |||||||| |||||||||    
T  27415655 tagagctgtcaaaacggacggtccgacccgtttaggaccgggcctaacgggcttcgggttttagcggatcggg 27415583  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 22666630 - 22666704
Alignment:
Q  305 ttatacatgttcaaatcattgatagccatattctatgattcttgcacactcgaaa-aaatattagcatattcaatt 379  Q
    ||||||||||||||  || ||||||   ||||||||||| |||||||||| |||| ||||||||||||||||||||    
T  22666630 ttatacatgttcaagccactgatagatttattctatgat-cttgcacacttgaaataaatattagcatattcaatt 22666704  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 463
Target Start/End: Complemental strand, 21828489 - 21828436
Alignment:
Q  410 gtagtaaattgattattttcgaaattaacttcttttaattgaatctacgtatga 463  Q
    ||||||||||| |||||||| |||| || ||||||| |||||||||| ||||||    
T  21828489 gtagtaaattgcttattttcaaaataaaattcttttcattgaatctaagtatga 21828436  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 433 - 564
Target Start/End: Complemental strand, 28259805 - 28259675
Alignment:
Q  433 attaacttcttttaattgaatctacgtatgattgttagagttttgactgatcttaaggggtcgccgcaattataaccagttaaaatgtggcggcat-gaa 531  Q
    ||||| |||||||||| ||||||  |||||| | |||||||||| ||| ||||||||||  ||  |||||||||||  |||||| || ||||  ||  ||    
T  28259805 attaaattcttttaatcgaatcttagtatgaat-ttagagttttaactcatcttaagggaacgttgcaattataactggttaaattgcggcgatataaaa 28259707  T
Q  532 ttaaaacttcccattgttatatcacggggtcat 564  Q
    ||||||||| |||||| || |||||||||||||    
T  28259706 ttaaaactt-ccattgctacatcacggggtcat 28259675  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 440 - 492
Target Start/End: Complemental strand, 21847700 - 21847648
Alignment:
Q  440 tcttttaattgaatctacgtatgattgttagagttttgactgatcttaagggg 492  Q
    |||||||||||||| || ||||||||||||| |||| |||| ||||| |||||    
T  21847700 tcttttaattgaatataagtatgattgttagggtttagactcatctttagggg 21847648  T

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