View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15935_low_3 (Length: 521)
Name: NF15935_low_3
Description: NF15935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15935_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 389 - 505
Target Start/End: Original strand, 9139531 - 9139647
Alignment:
| Q |
389 |
aaactattactactgagttgacaacataaaattagtatttacttgttaacacatttttatttcataattatgttcaggtgctgaggtgaaagtagattgc |
488 |
Q |
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| T |
9139531 |
aaactattaccaccgagttgacaacatagaattagtatttacttgttaacacatttttatttcataattatgttcaggtgctgaggtgaaagtagattgc |
9139630 |
T |
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| Q |
489 |
atgttcaaagcaatttc |
505 |
Q |
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| T |
9139631 |
atgttcaaagcaatttc |
9139647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 100 - 207
Target Start/End: Original strand, 9139122 - 9139228
Alignment:
| Q |
100 |
ggagaaattattataaattaaaaccataggaataacaattttacaattatttctaaagcgatttaaaaaattacaaagtcaaactcttattagtcagtag |
199 |
Q |
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| T |
9139122 |
ggagaaattattacaaattaaaaccataggaatgacaatttta-aattatttctattgcgatttaaaaaattataaagtcaaactcttatcagtcaacag |
9139220 |
T |
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| Q |
200 |
aaacctcg |
207 |
Q |
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| T |
9139221 |
aaacctcg |
9139228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 9139369 - 9139446
Alignment:
| Q |
322 |
aactatattatatcgtgtatattacagtgatattaatagtcattttacaaccatttctacgaaagttaaactattactactg |
403 |
Q |
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| T |
9139369 |
aactatattatat--tgtaaattacagtgatat--atattcattttatgaccatttctacgaaatctaaactattaccactg |
9139446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 9139074 - 9139106
Alignment:
| Q |
54 |
agttcaaatagagtgtttaatgttaagttcttt |
86 |
Q |
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| T |
9139074 |
agttcaaatagagtgtttaatgttaaattcttt |
9139106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 9139296 - 9139336
Alignment:
| Q |
285 |
aaagtcaaactcttattcttgaaaagggtacatcattaact |
325 |
Q |
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| T |
9139296 |
aaagtcatactcttattcgtgaaaaggttacatcattaact |
9139336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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