View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15936_low_1 (Length: 658)

Name: NF15936_low_1
Description: NF15936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15936_low_1
NF15936_low_1
[»] chr1 (8 HSPs)
chr1 (18-655)||(1462907-1463547)
chr1 (319-491)||(1496270-1496442)
chr1 (128-224)||(1496520-1496616)
chr1 (522-605)||(1482197-1482280)
chr1 (560-655)||(1496118-1496213)
chr1 (167-230)||(1481970-1482034)
chr1 (522-587)||(4154249-4154314)
chr1 (314-358)||(1480926-1480970)
[»] chr8 (3 HSPs)
chr8 (129-655)||(26790785-26791297)
chr8 (18-109)||(26790652-26790744)
chr8 (319-406)||(971412-971499)
[»] chr3 (3 HSPs)
chr3 (319-486)||(50276748-50276915)
chr3 (128-228)||(50276570-50276670)
chr3 (573-652)||(50276996-50277075)
[»] chr2 (3 HSPs)
chr2 (330-456)||(15869716-15869842)
chr2 (134-222)||(15869512-15869600)
chr2 (162-222)||(45197191-45197251)
[»] chr6 (1 HSPs)
chr6 (148-230)||(28950049-28950131)
[»] chr5 (1 HSPs)
chr5 (134-223)||(15161675-15161764)
[»] chr4 (2 HSPs)
chr4 (357-418)||(53074842-53074903)
chr4 (134-223)||(53075040-53075129)


Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 655
Target Start/End: Original strand, 1462907 - 1463547
Alignment:
Q  18 tgtcaatcaccatccgtatcgtggtatgtgttgaagttggctttagaaaataatgttacatttatttttatgtacttgaacatttaaatcattggnnnnn 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  1462907 tgtcaatcaccatccgtatcgtggtatgtgttgaagttggctttagaaaataatgttacatttatttttatgtacttgaacatttaaatcattggttttt 1463006  T
Q  118 nn-aatttattattttggcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatg 216  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463007 tttaatttattattttggcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatg 1463106  T
Q  217 atggtaagataacattatcacgattcacgactttcattttattttaatatt---aactaatgtaaaatatttaactcaatttcctaacacttccatatac 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||    
T  1463107 atggtaagataacattatcacgattcacgactttcattttattttaatattattaactaatgtaaaatatttaactcaatttcctaacactgccatatac 1463206  T
Q  314 acatgtaggtaccattatgacaatatcaaaggatggagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtg 413  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463207 acatgtaggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtg 1463306  T
Q  414 cttggcagttacatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaaattaaatttatatatgtttatannnnn 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||         
T  1463307 cttggcagttacatggccctaatgacagtcatatttttctgggccatgcatgattctgactttttctcggtaaattaaatttatatatgtttata-tttt 1463405  T
Q  514 nncatttaaatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcc 613  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463406 ttcatttaaatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcc 1463505  T
Q  614 tgctgagatgatggcagctctatacctgcaagtcagtataat 655  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1463506 tgctgagatgatggcagctctatacctgcaagtcagtataat 1463547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 319 - 491
Target Start/End: Complemental strand, 1496442 - 1496270
Alignment:
Q  319 taggtaccattatgacaatatcaaaggatggagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttgg 418  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| |||| || ||    
T  1496442 taggtaccattatgacaatatcaaaggatagagtgaaaccatctccactacctgatagttggaaactgagggagatatttgctactggtgttgtcctagg 1496343  T
Q  419 cagttacatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaaattaa 491  Q
     ||||||||||| |||||||||||  ||||||||||||| ||| | ||| || |||| || ||||||||||||    
T  1496342 aagttacatggcactaatgacagtagtatttttctgggcgatgaaagataccaacttcttttcggtaaattaa 1496270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 1496616 - 1496520
Alignment:
Q  128 attttggcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggtaag 224  Q
    ||||||| |||| ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||| || || ||||||||||||    
T  1496616 attttggtagttcggttttatgtttattgcgttgatctggaagtttgattttgcacccttcatggttttgattattgccattctaaatgatggtaag 1496520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 522 - 605
Target Start/End: Original strand, 1482197 - 1482280
Alignment:
Q  522 aatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgaga 605  Q
    ||||||||||||||| || | |||| ||||||||||| | ||||||| |||||| |||||||||||||| ||||||||||||||    
T  1482197 aatatcatcaccaacaagaaaaaatgctaagcactattacctttaaatatgttgaaggacaagtttggtatgaggtctttgaga 1482280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 655
Target Start/End: Complemental strand, 1496213 - 1496118
Alignment:
Q  560 agctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagtataat 655  Q
    ||||||| | ||||||||| ||||||||||||||||| || | ||| ||||||||| |||||||||||| ||| |||| || ||||| ||||||||    
T  1496213 agctttatatatgttgcagaacaagtttggtgtgaggcctataagacataatcctgatgagatgatggcggctttatatctacaagttagtataat 1496118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 1481970 - 1482034
Alignment:
Q  167 gaaatttgattttgcaccattcatggttttgatcattgc-aatactgaatgatggtaagataaca 230  Q
    |||||||||||||||||| |||||||||||||||||| | |||| |||| |||||||||||||||    
T  1481970 gaaatttgattttgcacccttcatggttttgatcattacaaatattgaaagatggtaagataaca 1482034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 4154314 - 4154249
Alignment:
Q  522 aatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagttt 587  Q
    ||||||||||| ||||||||||||  ||||||| ||| | ||||||| |||||| |||||||||||    
T  4154314 aatatcatcacaaactaggagaaaacctaagcattattacctttaaatatgttgaaggacaagttt 4154249  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 1480970 - 1480926
Alignment:
Q  314 acatgtaggtaccattatgacaatatcaaaggatggagttaaacc 358  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||    
T  1480970 acatttaggtaccattattacaatatcaaaggatagagttaaacc 1480926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 129 - 655
Target Start/End: Original strand, 26790785 - 26791297
Alignment:
Q  129 ttttggcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggtaagataa 228  Q
    ||||||||||||||||| ||| | ||||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||||||    
T  26790785 ttttggcagtttggttttatgcttattgctttgatttggaaatttgatttttctcccttcatggttttgatcattgcaatacttaatgatggtaagataa 26790884  T
Q  229 cattatcacgattcacgactttcattttatttt-aatatt----aactaatgtaaaatatttaactcaatttcctaacacttccatatacacatgtaggt 323  Q
    |||| ||||||||       ||||||| ||||| ||||||    |||||  || |||||||||||| ||| ||| |||||| |||||| ||  |||||||    
T  26790885 cattctcacgatt-------ttcatttcatttttaatattttctaactatagtcaaatatttaacttaatgtcc-aacactaccatatgca--tgtaggt 26790974  T
Q  324 accattatgacaatatcaaaggatggagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagtt 423  Q
    |||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||    
T  26790975 accattatgacaatatcaaaggatagagttaaaccatctccattgcctgatagttggaaacttaaggagatatttgctactggtattgtgcttggcagtt 26791074  T
Q  424 acatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaaattaaatttatatatgtttatannnnnnncatttaaa 523  Q
    ||||||| |||||||||||||||||||||||||| ||| | ||| | ||||||||||||||||| | ||||||||| | | | |        | |||||     
T  26791075 acatggcactaatgacagtcatatttttctgggcaatgaacgatactgactttttctcggtaaa-tcaatttatatttctattt-----tgtcttttaag 26791168  T
Q  524 tatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatg 623  Q
    |||||||| |||||||||||||| ||||| |  ||  |||||||| |    |||||||| |||||||||||||||||||||| ||| ||||| |||||||    
T  26791169 tatcatcatcaactaggagaaatcctaagtatcatttgctttaaata---cgcaggacacgtttggtgtgaggtctttgagagatagtcctgatgagatg 26791265  T
Q  624 atggcagctctatacctgcaagtcagtataat 655  Q
    ||||||||| | ||||| ||||||||||||||    
T  26791266 atggcagctttgtacctacaagtcagtataat 26791297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 26790652 - 26790744
Alignment:
Q  18 tgtcaatcaccatccgtatcgtggtatgtgttgaagttggctttagaaaataatgttaca-tttatttttatgtacttgaacatttaaatcat 109  Q
    |||||||||||||||||||||||||||||||| || ||||||||| |||| | |||| || ||| ||| ||||||||||||| ||||||||||    
T  26790652 tgtcaatcaccatccgtatcgtggtatgtgttaaaattggctttacaaaaaactgttgcactttttttctatgtacttgaacttttaaatcat 26790744  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 406
Target Start/End: Complemental strand, 971499 - 971412
Alignment:
Q  319 taggtaccattatgacaatatcaaaggatggagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactgg 406  Q
    |||||||||||||||||||||| || ||| | ||||| || || ||||| |||||||| ||||| || |  ||||| |||||||||||    
T  971499 taggtaccattatgacaatatccaaagatagggttaagccttcaccacttcctgatagttggaagcttagtgaaatttttgctactgg 971412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 319 - 486
Target Start/End: Original strand, 50276748 - 50276915
Alignment:
Q  319 taggtaccattatgacaatatcaaaggatggagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttgg 418  Q
    |||||||||||||||||||||| |||||| |||| |||||||||||| | || || || |||||||| |  || ||||||||||||||| ||||||| ||    
T  50276748 taggtaccattatgacaatatccaaggatagagtaaaaccatctccaatgccagacagttggaaactgagagagatatttgctactggtgttgtgctagg 50276847  T
Q  419 cagttacatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaa 486  Q
     || |||||||| |||||||||||  | |||||||||  |||| | ||| |||| || ||||||||||    
T  50276848 tagctacatggcactaatgacagtggtgtttttctggctcatgaaggataccgatttcttctcggtaa 50276915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 128 - 228
Target Start/End: Original strand, 50276570 - 50276670
Alignment:
Q  128 attttggcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggtaagata 227  Q
    |||||| ||||||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||||| || || || || ||||| ||||||||| |||||    
T  50276570 attttgccagtttggtttcatgttcattgccttgatctggaagtttgattttgcacccttcatggtgttaattatcgccatactaaatgatggtgagata 50276669  T
Q  228 a 228  Q
    |    
T  50276670 a 50276670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 573 - 652
Target Start/End: Original strand, 50276996 - 50277075
Alignment:
Q  573 ttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagtat 652  Q
    ||||||||||||||||||||||| ||  | ||||| || |||| ||| ||||||||||| || ||||| |||||||||||    
T  50276996 ttgcaggacaagtttggtgtgagatcaatcagaaacaaccctgatgaaatgatggcagccctctacctacaagtcagtat 50277075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 456
Target Start/End: Original strand, 15869716 - 15869842
Alignment:
Q  330 atgacaatatcaaaggatggagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatgg 429  Q
    |||||||| ||||||||  ||||||| ||||||||| | ||||||||||||||||| |  ||||||||||| |||||| |  |||||||  ||||| |||    
T  15869716 atgacaatttcaaaggacagagttaagccatctccaatgcctgatagctggaaactgagagaaatatttgcaactggtgtcatgcttggaggttacttgg 15869815  T
Q  430 ccctaatgacagtcatatttttctggg 456  Q
    |  | ||||| || ||||| |||||||    
T  15869816 caatgatgactgtgatattcttctggg 15869842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 134 - 222
Target Start/End: Original strand, 15869512 - 15869600
Alignment:
Q  134 gcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggta 222  Q
    ||||||||| |||||||| |||||  |||| ||||| ||||||||  | ||||||||||||||||| ||||| ||  | ||||||||||    
T  15869512 gcagtttggcttcatgtttattgcactgatatggaagtttgatttctctccattcatggttttgattattgccattttaaatgatggta 15869600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 45197251 - 45197191
Alignment:
Q  162 atttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggta 222  Q
    |||||||||||||||||  | || || ||||||||||||||||| ||||| ||||||||||    
T  45197251 atttggaaatttgatttctctccttttatggttttgatcattgccatacttaatgatggta 45197191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 28950049 - 28950131
Alignment:
Q  148 tgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggtaagataaca 230  Q
    |||| |||||||| || |||| ||||||||||| |  |||  ||||||||||||||| |||| | ||||||||||||||||||    
T  28950049 tgtttattgctttaatatggatatttgattttgaaatattgttggttttgatcattgtaatattcaatgatggtaagataaca 28950131  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 15161764 - 15161675
Alignment:
Q  134 gcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggtaa 223  Q
    ||||||||| || ||||| |||||  |||| ||||||||||||||  | ||||||||||||||||| ||||| ||  | |||||||||||    
T  15161764 gcagtttggctttatgtttattgcactgatatggaaatttgatttctctccattcatggttttgattattgccattttaaatgatggtaa 15161675  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 418
Target Start/End: Complemental strand, 53074903 - 53074842
Alignment:
Q  357 ccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttgg 418  Q
    ||||||||| | ||||||||||||||| | || ||||||||||||||||| ||||| |||||    
T  53074903 ccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttgg 53074842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 53075129 - 53075040
Alignment:
Q  134 gcagtttggtttcatgttaattgctttgatttggaaatttgattttgcaccattcatggttttgatcattgcaatactgaatgatggtaa 223  Q
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T  53075129 gcagtttggcttcatgttcattgcactgatctggaaatttgacttctctcctttcatggtcttgattattgccattcttaatgatggtaa 53075040  T

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