View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15936_low_3 (Length: 413)

Name: NF15936_low_3
Description: NF15936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15936_low_3
NF15936_low_3
[»] chr1 (6 HSPs)
chr1 (41-269)||(44827405-44827643)
chr1 (91-324)||(16767409-16767652)
chr1 (117-324)||(50515722-50515939)
chr1 (117-324)||(45910153-45910370)
chr1 (225-324)||(44712728-44712827)
chr1 (117-202)||(44712860-44712945)
[»] chr6 (1 HSPs)
chr6 (53-317)||(24132817-24133100)
[»] chr2 (8 HSPs)
chr2 (45-175)||(19991178-19991317)
chr2 (97-324)||(26263142-26263378)
chr2 (97-291)||(10924584-10924788)
chr2 (117-324)||(17312134-17312351)
chr2 (225-324)||(38619753-38619852)
chr2 (125-202)||(28313010-28313087)
chr2 (45-97)||(26263063-26263115)
chr2 (152-198)||(38619670-38619716)
[»] chr3 (4 HSPs)
chr3 (100-324)||(6161683-6161917)
chr3 (225-330)||(52972068-52972173)
chr3 (97-195)||(54586777-54586875)
chr3 (240-330)||(54586930-54587020)
[»] chr5 (6 HSPs)
chr5 (45-324)||(38965934-38966229)
chr5 (123-324)||(13850346-13850557)
chr5 (117-198)||(20235942-20236023)
chr5 (240-289)||(31045294-31045343)
chr5 (117-198)||(34833657-34833738)
chr5 (240-324)||(34833551-34833635)
[»] chr8 (6 HSPs)
chr8 (100-324)||(754448-754683)
chr8 (97-324)||(23710152-23710389)
chr8 (97-207)||(40455932-40456042)
chr8 (220-324)||(9140144-9140248)
chr8 (117-198)||(9173497-9173578)
chr8 (45-95)||(23710430-23710480)
[»] chr7 (4 HSPs)
chr7 (46-184)||(15889458-15889602)
chr7 (220-301)||(15890912-15890993)
chr7 (220-301)||(41257011-41257092)
chr7 (240-323)||(19216051-19216134)
[»] chr4 (2 HSPs)
chr4 (327-390)||(34256100-34256163)
chr4 (225-300)||(46223769-46223844)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 41 - 269
Target Start/End: Original strand, 44827405 - 44827643
Alignment:
Q  41 acatcgaaacttgatatttccttaggtgatgcaaaagtagatgatgctcctcctcctgttgtttgaattgatcatggagaagattttaccaccaagcaaa 140  Q
    |||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44827405 acatggaaacttgatatttccttaagtgatgcaaaagtagatgatactcctcctcctattgtttgaattgatcatggagaagattttaccaccaagcaaa 44827504  T
Q  141 agtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattggt----------atggtgacaatgg 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          | |||||||||||    
T  44827505 agtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattggtaaatccgataaaggtgacaatgg 44827604  T
Q  231 aagaagtgtatttgttaccgtgatatgtgaaagaggagt 269  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  44827605 aagaagtgtttttgttaccgtgatatgtgaaagaggagt 44827643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 91 - 324
Target Start/End: Complemental strand, 16767652 - 16767409
Alignment:
Q  91 tcctcctgttgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaagg 190  Q
    ||||||||||||||| ||| |||||| |||| |||||||||| ||  ||||||||  ||||||||||||||| ||||||| ||||||||||||| |||||    
T  16767652 tcctcctgttgtttgtattaatcatgaagaacattttaccacaaacaaaaagttttctacgcggaatgatttgttggagtaggttcgagagaaagcaagg 16767553  T
Q  191 aagcttggatttacaaccgtcattggt----------atggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaagg 280  Q
    |||||||||||||||| ||||||||||          | | ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||    
T  16767552 aagcttggatttacaatcgtcattggtaaatccgataaagatgacaatggaagaagtgcatttgttaccgtgatatgtgaaataggaggttcatacaggg 16767453  T
Q  281 agtacaagaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |||||||||||||||||||| | |||||||| ||||| ||||||    
T  16767452 agtacaagaggaagactcggtgcaaaattgcaggttcagttaaa 16767409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 324
Target Start/End: Original strand, 50515722 - 50515939
Alignment:
Q  117 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattgg 216  Q
    ||||| |||||||||| || || |||||||  || ||||||||||| |||||||||||| |||||||| | ||||||||||| ||| | || || |||||    
T  50515722 gagaacattttaccactaaacacaagtttgcaacacggaatgatttgttggagtgggttggagagaaagctaggaagcttggtttttccactgttattgg 50515821  T
Q  217 tat----------ggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaa 306  Q
    ||           |||| |||||||||||||| |||| ||||  ||||||||||||| | || ||||||||| ||||||||||| |||| ||||||  |     
T  50515822 taaatccgataacggtggcaatggaagaagtgcatttcttactttgatatgtgaaagggaaggttcatacaatgagtacaagagaaagagtcggcgcgag 50515921  T
Q  307 attgctggttcggttaaa 324  Q
    || ||| |||||||||||    
T  50515922 atagctagttcggttaaa 50515939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 324
Target Start/End: Complemental strand, 45910370 - 45910153
Alignment:
Q  117 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattgg 216  Q
    ||||| |||||||||| || || ||||||   || | ||||||||| |||||||||||| |||||||| | ||||||||||| ||| | || || |||||    
T  45910370 gagaacattttaccactaaacacaagtttccaacacagaatgatttgttggagtgggttggagagaaagctaggaagcttggtttttccactgttattgg 45910271  T
Q  217 tat----------ggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaa 306  Q
    ||           |||| |||||||||||| | |||||||||  ||||||||||||| |||| ||||||||  ||||||||||| |||| ||||||  |     
T  45910270 taaatctgataacggtggcaatggaagaagcgcatttgttactttgatatgtgaaaggggaggttcatacatcgagtacaagagaaagattcggcgcgag 45910171  T
Q  307 attgctggttcggttaaa 324  Q
    || |||||||||||||||    
T  45910170 atagctggttcggttaaa 45910153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 44712827 - 44712728
Alignment:
Q  225 caatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |||||||||||| | |||||||||  ||||||||||||| |||| ||||||||  ||||||||||| |||| ||||||  | || | |||||||||||||    
T  44712827 caatggaagaagcgcatttgttactttgatatgtgaaaggggaggttcatacaccgagtacaagagaaagagtcggcgccagatagttggttcggttaaa 44712728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 44712945 - 44712860
Alignment:
Q  117 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggattt 202  Q
    ||||| |||||||||| || || |||||||  || ||||||||||| ||| |||||||| |||||||| | ||||||||||| |||    
T  44712945 gagaacattttaccactaaacacaagtttgcaacacggaatgatttgttgaagtgggttggagagaaagctaggaagcttggtttt 44712860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 53 - 317
Target Start/End: Complemental strand, 24133100 - 24132817
Alignment:
Q  53 gatatttccttaggtgatgcaaaagtagatgatgctcctcctcct---------gttgtttgaattgatcatggagaagattttaccaccaagcaaaagt 143  Q
    |||| |||||| |||||||||||||||||||||||||||||||||         |||||||| ||||||||||||||| |||| ||||||||| ||||||    
T  24133100 gatagttcctttggtgatgcaaaagtagatgatgctcctcctcctattcctcgtgttgtttgtattgatcatggagaacatttaaccaccaagaaaaagt 24133001  T
Q  144 ttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattggtat----------ggtgacaatggaag 233  Q
    ||  ||| ||||||||||| |||||||||||||||| |||| ||| |||   |||||||||| ||||||||| ||           |||| |||||||||    
T  24133000 ttactactcggaatgatttgttggagtgggttcgagggaaagcaaagaaatgtggatttacatccgtcattgctaaatccgataaaggtggcaatggaag 24132901  T
Q  234 aagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttc 317  Q
    ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  24132900 aagtgcattcgttaccgtgatatgtgaaagaggaggttcatacaaggagtacaagaggaagactcagcgcaaaattgttggttc 24132817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 19991317 - 19991178
Alignment:
Q  45 cgaaacttgatatttccttaggtgatgcaaaagtagatgatgctcct---------cctcctgttgtttgaattgatcatggagaagattttaccaccaa 135  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         |||| || |||||| ||||||||||||||| |||||||||||||    
T  19991317 cgaaacttgatatttccttaggtgatgcaaaagtagatgatgctcctcctcatattcctcgtgctgtttgtattgatcatggagaacattttaccaccaa 19991218  T
Q  136 gcaaaagtttgttacgcggaatgatttattggagtgggtt 175  Q
    |||||| |||||||| ||||| ||||| || |||||||||    
T  19991217 gcaaaaatttgttacacggaacgatttgttagagtgggtt 19991178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 97 - 324
Target Start/End: Original strand, 26263142 - 26263378
Alignment:
Q  97 tgttgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagctt 196  Q
    ||||||||| ||||||||| ||||| ||||||||||||| |||| ||||| ||| |  || ||||| |||||||||||||||||| || ||||||||||     
T  26263142 tgttgtttgtattgatcattgagaacattttaccaccaaacaaaggtttgctacacataacgatttgttggagtgggttcgagaggaagcaaggaagcta 26263241  T
Q  197 ggatttacaaccgtcattggt----------atggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtaca 286  Q
    |||||| ||||| | ||||||          | ||||  ||||||||||||| ||||||||| |||||||||||||||| || ||||||||  |||||||    
T  26263242 ggattttcaacc-ttattggtaaatcagataaaggtggaaatggaagaagtgcatttgttactgtgatatgtgaaagagaaggttcatacaccgagtaca 26263340  T
Q  287 agaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    ||| |  || |||||| |||||  || |||||||||||    
T  26263341 agaagttgattcggcgcaaaatatctagttcggttaaa 26263378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 291
Target Start/End: Original strand, 10924584 - 10924788
Alignment:
Q  97 tgttgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagctt 196  Q
    ||||||||  |||||| || ||||| ||||||||||||| |||||||||| ||| | ||| ||||| |||||||||||||||||| || ||||||||||     
T  10924584 tgttgtttctattgatgatcgagaatattttaccaccaaacaaaagtttgctacacagaacgatttgttggagtgggttcgagaggaagcaaggaagcta 10924683  T
Q  197 ggatttacaaccgtcattggt----------atggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtaca 286  Q
    | ||||  |||||| ||||||          | |||| ||||||||||| || |||||||||  |||||||||||||||||| ||||||||  || ||||    
T  10924684 gaattttaaaccgttattggtaaatcagataaaggtggcaatggaagaaatgcatttgttactatgatatgtgaaagaggaggttcatacaccgaataca 10924783  T
Q  287 agagg 291  Q
    |||||    
T  10924784 agagg 10924788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 117 - 324
Target Start/End: Complemental strand, 17312351 - 17312134
Alignment:
Q  117 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattgg 216  Q
    ||||| |||||||||| || || |||||||  || ||||||||||| |||||||||||| |||||||| | ||||||||||| ||| | || || |||||    
T  17312351 gagaacattttaccactaaacacaagtttgcaacacggaatgatttgttggagtgggttggagagaaagctaggaagcttggtttttccactgttattgg 17312252  T
Q  217 tat----------ggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaa 306  Q
    ||           |||| ||||||||||||   |||||||||  ||||||||||||| |||| ||||||||  ||||||||||| |||| ||||||  |     
T  17312251 taaatccgataacggtggcaatggaagaagcacatttgttactttgatatgtgaaaggggaggttcatacaccgagtacaagagaaagagtcggcgggag 17312152  T
Q  307 attgctggttcggttaaa 324  Q
    || |||||||||||||||    
T  17312151 atagctggttcggttaaa 17312134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 324
Target Start/End: Original strand, 38619753 - 38619852
Alignment:
Q  225 caatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |||||||||||| | |||||||||  ||||||||||||| |||| ||||||||  ||||||||||| |||| ||| ||| | || |||||||||||||||    
T  38619753 caatggaagaagcgcatttgttactttgatatgtgaaaggggaggttcatacatcgagtacaagagaaagagtcgacgtgagatagctggttcggttaaa 38619852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 28313087 - 28313010
Alignment:
Q  125 tttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggattt 202  Q
    ||||||||||| |||||||||  ||| | ||| |||||||||||||||||||||||| ||  ||||||||| ||||||    
T  28313087 tttaccaccaaacaaaagttttctacacagaacgatttattggagtgggttcgagagtaagtaaggaagctaggattt 28313010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 26263063 - 26263115
Alignment:
Q  45 cgaaacttgatatttccttaggtgatgcaaaagtagatgatgctcctcctcct 97  Q
    ||||| |||||||||| ||||| ||||| |||||||| |||||||||||||||    
T  26263063 cgaaagttgatatttctttaggagatgcgaaagtagaggatgctcctcctcct 26263115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 38619670 - 38619716
Alignment:
Q  152 cggaatgatttattggagtgggttcgagagaaaacaaggaagcttgg 198  Q
    ||||||||||| |||||||||||| |||||||| | |||||||||||    
T  38619670 cggaatgatttgttggagtgggttggagagaaatctaggaagcttgg 38619716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 324
Target Start/End: Complemental strand, 6161917 - 6161683
Alignment:
Q  100 tgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttgga 199  Q
    |||||| ||||| ||  ||||| |||||||||  |||||||||||||  || ||||||||||| ||||||||||||||||||||| | || ||||||||     
T  6161917 tgtttgtattgaccagcgagaacattttaccaataagcaaaagtttgcaacacggaatgatttgttggagtgggttcgagagaaagctagcaagcttggt 6161818  T
Q  200 tttacaaccgtcattggt----------atggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaaga 289  Q
    ||| | || || ||||||          | |||| ||||||||||||   |||||||||  ||||||||||||  |||| ||||||||  ||||||||||    
T  6161817 ttttccactgttattggtaaattcgataacggtggcaatggaagaagcacatttgttactttgatatgtgaaatgggaggttcatacaccgagtacaaga 6161718  T
Q  290 ggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    | |||| ||||||  | || |||||||||||||||    
T  6161717 gaaagagtcggcgcgagatagctggttcggttaaa 6161683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 225 - 330
Target Start/End: Complemental strand, 52972173 - 52972068
Alignment:
Q  225 caatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |||||||||||| | |||||||||  |||||||||||||||| | ||||||||  ||||||||||| |||| ||||||  | || |||| ||||||||||    
T  52972173 caatggaagaagcgcatttgttactttgatatgtgaaagagggggttcatacaccgagtacaagagaaagagtcggcgcgagatagctgcttcggttaaa 52972074  T
Q  325 agcaag 330  Q
     |||||    
T  52972073 tgcaag 52972068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 195
Target Start/End: Original strand, 54586777 - 54586875
Alignment:
Q  97 tgttgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagct 195  Q
    ||||||||| ||||||||  ||||| |||||||||| |  || |||||||  || |  |||||||| ||||||||||||||||||||| | ||||||||    
T  54586777 tgttgtttgtattgatcagcgagaacattttaccactacacacaagtttgcaacacataatgatttgttggagtgggttcgagagaaagctaggaagct 54586875  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 330
Target Start/End: Original strand, 54586930 - 54587020
Alignment:
Q  240 atttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcggttaaaagcaag 330  Q
    |||||||||  ||||||||||||| |||| ||||||||   |||| ||||| |||| ||||||  | || ||||||||||||||| |||||    
T  54586930 atttgttactttgatatgtgaaaggggaggttcatacacaaagtataagagaaagagtcggcgcgagatagctggttcggttaaatgcaag 54587020  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 324
Target Start/End: Original strand, 38965934 - 38966229
Alignment:
Q  45 cgaaacttgatatttccttaggtgatgcaaaagtagatgatgctcctcctcct------gttgtttgaattgatcatggagaagattttaccaccaagca 138  Q
    |||||||||| ||||| ||| | ||||| |||||||||||||||| |||||||      |||||||| ||||||||  ||||| |||||||||| |  ||    
T  38965934 cgaaacttgaaatttctttaagcgatgcgaaagtagatgatgctcatcctcctattcctgttgtttgtattgatcagcgagaacattttaccactacaca 38966033  T
Q  139 aaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattggtat----------ggtgacaat 228  Q
     |||||||  || ||||||||||| |||||||| |||||||||||| | |||||||| || ||| | || || |||| ||           |||| ||||    
T  38966034 taagtttgcaacacggaatgatttgttggagtgagttcgagagaaagctaggaagctcggtttttccactgttattgttaaatccgataacggtggcaat 38966133  T
Q  229 ggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |||||||| | ||| |||||  ||||||||||||  |||| ||||||||  ||||||| ||| |||| ||||||  | || |||||||||||||||    
T  38966134 ggaagaagcgcattggttactttgatatgtgaaaagggaggttcatacaccgagtacaggagaaagagtcggcgcgagatagctggttcggttaaa 38966229  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 324
Target Start/End: Complemental strand, 13850557 - 13850346
Alignment:
Q  123 attttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttggatttacaaccgtcattggta---- 218  Q
    |||||||||| || || |||||||  ||  |||||||||| |||||||||||| |||||||| | ||||||||||| ||| | || || |||||||        
T  13850557 attttaccactaaacacaagtttgcaacatggaatgatttgttggagtgggttggagagaaagctaggaagcttggtttttccactgttattggtaaatc 13850458  T
Q  219 ------tggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgct 312  Q
          ||||| |||||||||||| ||| |||||||   |||||||||||| || | ||||||||  ||||||||||| |||| ||||||  | || |||    
T  13850457 cgataatggtggcaatggaagaagcgtagttgttacttcgatatgtgaaaggggtggttcatacaccgagtacaagagaaagagtcggcgcgagatagct 13850358  T
Q  313 ggttcggttaaa 324  Q
    ||||||||||||    
T  13850357 ggttcggttaaa 13850346  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 20236023 - 20235942
Alignment:
Q  117 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttgg 198  Q
    ||||| |||||||||| || || |||||||  || ||||||||||| |||||||||||| |||||||| | |||||||||||    
T  20236023 gagaacattttaccactaaacacaagtttgcaacacggaatgatttgttggagtgggttagagagaaagctaggaagcttgg 20235942  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 31045343 - 31045294
Alignment:
Q  240 atttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaaga 289  Q
    ||||||||  ||||||||| ||||||||| |||||||| |||||||||||    
T  31045343 atttgttattgtgatatgtaaaagaggaggttcatacacggagtacaaga 31045294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 34833738 - 34833657
Alignment:
Q  117 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttgg 198  Q
    ||||| |||||||||| || || |||||||  || ||||||||||| ||| |||||||| |||||||| | || ||||||||    
T  34833738 gagaacattttaccactaaacacaagtttgcaacacggaatgatttgttgaagtgggttggagagaaagctagaaagcttgg 34833657  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 34833635 - 34833551
Alignment:
Q  240 atttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |||||||||  ||||||||||||| |||| ||||||||  ||||| ||||| |||| |||| |  | || |||||||||||||||    
T  34833635 atttgttactttgatatgtgaaaggggaggttcatacaccgagtataagagaaagagtcggtgcgagatagctggttcggttaaa 34833551  T

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Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 100 - 324
Target Start/End: Original strand, 754448 - 754683
Alignment:
Q  100 tgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttgga 199  Q
    |||||| ||||| ||  ||||| |||||||||| || || |||||||  |  ||||||||||| ||||||||||||||||||||| |  ||||||||||     
T  754448 tgtttgtattgaccagcgagaacattttaccactaaacacaagtttgcaaaacggaatgatttgttggagtgggttcgagagaaagcttggaagcttggt 754547  T
Q  200 tttacaaccgtcattggta----------tggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaaga 289  Q
    ||| | || || |||||||          ||||| |||||||||||| | |||||||||  ||||||||||||  |||| ||||||||  ||||||||||    
T  754548 ttttccactgttattggtaaatccgataatggtggcaatggaagaagcgcatttgttactttgatatgtgaaatgggaggttcatacaccgagtacaaga 754647  T
Q  290 g-gaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |  |||| ||||||| | || |||||||||||||||    
T  754648 gaaaagagtcggcgtgagatagctggttcggttaaa 754683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 324
Target Start/End: Complemental strand, 23710389 - 23710152
Alignment:
Q  97 tgttgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagctt 196  Q
    ||||||||| ||||||||  ||||| |||||||||| |  || |||||||  || || |||||||| ||||||||||||| ||||||| | ||||||||     
T  23710389 tgttgtttgtattgatcagcgagaacattttaccactacacacaagtttgcaacacgaaatgatttgttggagtgggttcaagagaaagctaggaagctc 23710290  T
Q  197 ggatttacaaccgtcattggtat----------ggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtaca 286  Q
    || ||| | || || |||||||           |||| |||||||||||| |  ||||||||| ||||||||||||| |||| ||||||||  |||||||    
T  23710289 ggtttttccactgttattggtaaatccgataacggtggcaatggaagaagcgcctttgttaccttgatatgtgaaaggggaggttcatacaccgagtaca 23710190  T
Q  287 agaggaagactcggcgtaaaattgctggttcggttaaa 324  Q
    |||| |||| ||||||  | || |||||||| ||||||    
T  23710189 agagaaagagtcggcgcgagatagctggttctgttaaa 23710152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 40456042 - 40455932
Alignment:
Q  97 tgttgtttgaattgatcatggagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagctt 196  Q
    ||||||||  ||||||||| ||||| | ||||||||||| ||||||||||||||||| ||  |||| ||||||||||||| |||| || |||||||| |     
T  40456042 tgttgtttctattgatcatcgagaacagtttaccaccaaacaaaagtttgttacgcgaaacaatttgttggagtgggttcaagaggaagcaaggaagtta 40455943  T
Q  197 ggatttacaac 207  Q
    |||||| ||||    
T  40455942 ggattttcaac 40455932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 324
Target Start/End: Complemental strand, 9140248 - 9140144
Alignment:
Q  220 ggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcgg 319  Q
    |||| ||||||||||||   |||||||||  ||||||||||||| |||||||||||||  ||||||||||| |||| ||||||  | || ||||||||||    
T  9140248 ggtggcaatggaagaagctcatttgttactttgatatgtgaaaggggagtttcatacaccgagtacaagagaaagagtcggcgcgagatagctggttcgg 9140149  T
Q  320 ttaaa 324  Q
     ||||    
T  9140148 ctaaa 9140144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 9173578 - 9173497
Alignment:
Q  117 gagaagattttaccaccaagcaaaagtttgttacgcggaatgatttattggagtgggttcgagagaaaacaaggaagcttgg 198  Q
    ||||| |||||||||| || || |||||||  || || |||||||| |||||||||||| |||||||| | |||||||||||    
T  9173578 gagaacattttaccactaaacacaagtttgcaacacgaaatgatttgttggagtgggttggagagaaatctaggaagcttgg 9173497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 23710480 - 23710430
Alignment:
Q  45 cgaaacttgatatttccttaggtgatgcaaaagtagatgatgctcctcctc 95  Q
    |||||||||| ||||| ||||| ||||| |||||||| |||||||||||||    
T  23710480 cgaaacttgaaatttctttaggcgatgcgaaagtagaggatgctcctcctc 23710430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 15889458 - 15889602
Alignment:
Q  46 gaaacttgatatttccttaggtgatgcaaaagtagatgatgctcctcctcc------tgttgtttgaattgatcatggagaagattttaccaccaagcaa 139  Q
    ||||||||| ||||| ||||| |||||||||||||| ||||||||||||||      ||||||||| ||||||||  ||||| |||||||||| |  ||     
T  15889458 gaaacttgaaatttctttaggcgatgcaaaagtagaggatgctcctcctcctattcttgttgtttgtattgatcaacgagaacattttaccactacacac 15889557  T
Q  140 aagtttgttacgcggaatgatttattggagtgggttcgagagaaa 184  Q
    ||||||| ||| |  |||||||| |||||||  ||||||||||||    
T  15889558 aagtttgctacacataatgatttgttggagtccgttcgagagaaa 15889602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 15890912 - 15890993
Alignment:
Q  220 ggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggc 301  Q
    ||||||||| ||||||| | |||||||||  ||||||||||||| |||| || |||||  ||||||||||| |||| |||||    
T  15890912 ggtgacaattgaagaagcgcatttgttactttgatatgtgaaaggggaggtttatacaccgagtacaagagaaagagtcggc 15890993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 301
Target Start/End: Complemental strand, 41257092 - 41257011
Alignment:
Q  220 ggtgacaatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggc 301  Q
    |||| ||||||||||||   |||||||||  |||||||||||||||||| ||||||||  | ||||||||| |||| |||||    
T  41257092 ggtggcaatggaagaagcacatttgttactttgatatgtgaaagaggaggttcatacaccgtgtacaagagaaagagtcggc 41257011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 323
Target Start/End: Original strand, 19216051 - 19216134
Alignment:
Q  240 atttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcggcgtaaaattgctggttcggttaa 323  Q
    |||||||||  || |||||||||| |||| ||||||||  ||||||||||| |||| ||||||  | || ||||||||||||||    
T  19216051 atttgttactttggtatgtgaaaggggaggttcatacaccgagtacaagagaaagagtcggcgcgagatagctggttcggttaa 19216134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 34256163 - 34256100
Alignment:
Q  327 caagaagaaatttccacattaagtttattaacacgtgtcttaagggcacatgtttgcatttccc 390  Q
    |||||||||||||| |||| ||||| ||||||| ||| |||||||||||||||| |||||||||    
T  34256163 caagaagaaatttctacatcaagttcattaacatgtgccttaagggcacatgttagcatttccc 34256100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 225 - 300
Target Start/End: Original strand, 46223769 - 46223844
Alignment:
Q  225 caatggaagaagtgtatttgttaccgtgatatgtgaaagaggagtttcatacaaggagtacaagaggaagactcgg 300  Q
    ||||||||||||   |||||||||  |||||||||||||||| | ||||||||  ||||||||||| |||| ||||    
T  46223769 caatggaagaagcacatttgttactttgatatgtgaaagagggggttcatacaccgagtacaagagaaagagtcgg 46223844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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