View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15936_low_5 (Length: 271)
Name: NF15936_low_5
Description: NF15936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15936_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 4082736 - 4082978
Alignment:
| Q |
18 |
agaagatgctaagattcttggcgtcttcctaaatccgtgtagcagtagaaggaagcgagtctccaattaccattgataggatcttagatagcaataaaga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4082736 |
agaagatgctaagattcttggcgtcttcctaaatccgtgtagccgtagaaggaagcgagtctccaattaccattgataggatcttagatagcaataaaga |
4082835 |
T |
|
| Q |
118 |
atagtttaacagggaacaatttatcgagtttcacagagaatttctagtcccccgtttcttccaattcgatcgacaaagaaatgattatcaatctatatgg |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4082836 |
atagtttaacagggaacaatttattgagtttcacagagaatttctagtcccccgtttcttccaattcgatcgacaaagaaatgattatcaatctatatgg |
4082935 |
T |
|
| Q |
218 |
tttgctagaaatgaggccagatttaataataagttcctttctt |
260 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4082936 |
tttgctagaaatgaggccaaatttaataataagttcctttctt |
4082978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University