View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15937_high_11 (Length: 356)

Name: NF15937_high_11
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15937_high_11
NF15937_high_11
[»] chr7 (4 HSPs)
chr7 (157-341)||(13937597-13937781)
chr7 (157-341)||(39286628-39286812)
chr7 (157-341)||(9987422-9987605)
chr7 (161-337)||(17218303-17218479)
[»] chr3 (2 HSPs)
chr3 (157-341)||(15259680-15259864)
chr3 (161-337)||(33590845-33591020)
[»] chr2 (1 HSPs)
chr2 (157-329)||(31140328-31140500)
[»] chr4 (5 HSPs)
chr4 (13-172)||(18747729-18747886)
chr4 (14-134)||(52367702-52367822)
chr4 (195-336)||(30231040-30231180)
chr4 (203-285)||(18748671-18748751)
chr4 (262-306)||(18748626-18748670)
[»] chr8 (3 HSPs)
chr8 (8-137)||(24252748-24252877)
chr8 (157-341)||(14330807-14330990)
chr8 (196-306)||(24251537-24251645)
[»] chr1 (2 HSPs)
chr1 (8-137)||(23247912-23248041)
chr1 (195-336)||(23246701-23246840)
[»] scaffold0094 (1 HSPs)
scaffold0094 (161-341)||(6810-6989)
[»] chr5 (2 HSPs)
chr5 (157-341)||(21724279-21724462)
chr5 (157-341)||(21804015-21804198)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 13937597 - 13937781
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13937597 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 13937696  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13937697 cttgtatttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatatat 13937781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 39286628 - 39286812
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39286628 tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 39286727  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39286728 cttgtttttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatatat 39286812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 9987422 - 9987605
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  9987422 tttcaaggtattaccattcactctctctattataatatatgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaattt 9987521  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||| ||||||  |||| |||||||||||||    
T  9987522 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctagattcatgtttgatgttgaaatatat 9987605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 17218479 - 17218303
Alignment:
Q  161 aaggtattactatccactctctctatta-taatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttctt 259  Q
    |||||||||| || |||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||   ||| |     
T  17218479 aaggtattaccattcactctctctattaataatatgtgttatcttcaaaaaatcaaccatgttcccataaacttgtacttgattcttggttttgttt-ta 17218381  T
Q  260 gtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat 337  Q
    | |||||||||||||||||| |||||  |||||| |||||| || |  | ||||||||||||  |||| |||||||||    
T  17218380 gggtttattttgttttacttattagggattttagagtgctttaccatctagacctggattcatgtttgctgttgaaat 17218303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 15259864 - 15259680
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15259864 tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 15259765  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15259764 cttgtgtttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatatat 15259680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 337
Target Start/End: Original strand, 33590845 - 33591020
Alignment:
Q  161 aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg 260  Q
    ||||||| || || |||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| | |    
T  33590845 aaggtatcaccattcactctctctattacaatatgtattctcttcaacaaatcaaccatgtttccataaacttgtacctgattcttagttcaattt-tag 33590943  T
Q  261 tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat 337  Q
      |||||||| |||||||| ||| | ||||| |||||||||||||| | ||||||||||||| |||| |||||||||    
T  33590944 gatttattttattttacttattaaggtttttggtgtgcttaactacctagacctggattcacgtttgctgttgaaat 33591020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 157 - 329
Target Start/End: Original strand, 31140328 - 31140500
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31140328 tttcaaggtattactacccactctctctattataatgggtgttctcttcaacaaatcaaccatgttcccataaatttgtacctgatttttggttcaattt 31140427  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgtt 329  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  31140428 cttgtgtttattttgttttacttaatagggtttttagtgtgcttaactacatggacctggattcacctttgtt 31140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 18747886 - 18747729
Alignment:
Q  13 actctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtggataat 112  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18747886 actctccaagaaagcttaaaaactct--gaagttctgttcagttgaatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtggataat 18747789  T
Q  113 aattaataacaatttcatctatgatcactactaaaatagagtgatttcaaggtattacta 172  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18747788 aattaataacaatttcatctatgatcactactaaaatacagtgatttcaaggtattacta 18747729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 52367702 - 52367822
Alignment:
Q  14 ctctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtggataata 113  Q
    ||||||||||||||||| ||| ||||||||||||| ||| |||||||| ||||||||||| |||| ||||||||||| ||||||| |||||||||| |||    
T  52367702 ctctccaagaaagcttataaattctttgaagttctcttctgttggatggtagtgtccactgtatggccaaatagcctgcatttttatgtagtggatgata 52367801  T
Q  114 attaataacaatttcatctat 134  Q
    ||||||||||| |||| ||||    
T  52367802 attaataacaacttcagctat 52367822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 30231040 - 30231180
Alignment:
Q  195 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt 294  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| ||||  |||||||||||| | | |||||||||||||||||| ||||||||||| ||    
T  30231040 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacatgatgcttggttcaattt-tagggtttattttgttttacttattaggattttttgt 30231138  T
Q  295 gtgcttaactacatggacctggattcacctttgttgttgaaa 336  Q
    ||| |||||||| | ||| ||||||||  |||| ||||||||    
T  30231139 gtgtttaactacctagacttggattcatgtttgctgttgaaa 30231180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 18748751 - 18748671
Alignment:
Q  203 ttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttagg 285  Q
    ||||||||||| | |||||| |||||||||||||||||||| || ||||||||| | | |||||||||||||||||| |||||    
T  18748751 ttcaacaaatctagcatgttaccataaacttgtacctgattctt-gttcaattt-tagggtttattttgttttacttattagg 18748671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 18748670 - 18748626
Alignment:
Q  262 gtttattttgttttacttgttaggatttttagtgtgcttaactac 306  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  18748670 gtttattttgttttacttattagggtttttagtgtgcttaactac 18748626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 24252748 - 24252877
Alignment:
Q  8 attatactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtgg 107  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24252748 attatgctctccaagaaagcttaaaaactctttgaagttctcttcaattggatgatagtatccactttatggccaaatagccttcatttttgtgtagtgg 24252847  T
Q  108 ataataattaataacaatttcatctatgat 137  Q
    ||||||||||||||||| || | |||||||    
T  24252848 ataataattaataacaactttagctatgat 24252877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 14330807 - 14330990
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||  |||||| || |||||||||    
T  14330807 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgttcccataaacttgtgactgattctttgttcaattt 14330906  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||| ||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| |||||||||||||    
T  14330907 c-agggtttatttttttttatttcttagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatatat 14330990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 24251537 - 24251645
Alignment:
Q  196 tgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagtg 295  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| || ||| |||||||| | | |||||||||||||||||| ||||| |||||||||    
T  24251537 tgttttcttcaacaaatcaagcatgttaccataaacttgtacctggttcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagtg 24251634  T
Q  296 tgcttaactac 306  Q
    |||||||||||    
T  24251635 tgcttaactac 24251645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 23247912 - 23248041
Alignment:
Q  8 attatactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtgg 107  Q
    ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23247912 attatgctctccaagaaagcttaaaaactctttgaagttctcttaagttggatgatagtatccactttatggccaaatagccttcatttttgtgtagtgg 23248011  T
Q  108 ataataattaataacaatttcatctatgat 137  Q
    ||||||||||||||||| || | |||||||    
T  23248012 ataataattaataacaacttaagctatgat 23248041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 23246701 - 23246840
Alignment:
Q  195 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt 294  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||| | | |||||||||||||||||| ||||| ||||||||    
T  23246701 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacctgattcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagt 23246798  T
Q  295 gtgcttaactacatggacctggattcacctttgttgttgaaa 336  Q
    |||||||||||| | ||| | ||||||  |||| ||||||||    
T  23246799 gtgcttaactacctagacatagattcatgtttgatgttgaaa 23246840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 341
Target Start/End: Original strand, 6810 - 6989
Alignment:
Q  161 aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg 260  Q
    |||||||||| || |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |    
T  6810 aaggtattaccattcactctctatattataatatgtgttctcttcaataaatcaaccatgttcccataaacttgtacctgattcttggttcaattt-tag 6908  T
Q  261 tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
     |||||||||||||||||| ||||| ||||||| || ||| || || | ||||||||||||  ||| ||||||||||||||    
T  6909 ggtttattttgttttacttattagggtttttagcgtcctttaccacctagacctggattcatgtttattgttgaaatatat 6989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 21724279 - 21724462
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||| || |||||||||    
T  21724279 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt 21724378  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| |||||||||||||    
T  21724379 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatatat 21724462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 21804015 - 21804198
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||| || |||||||||    
T  21804015 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt 21804114  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| |||||||||||||    
T  21804115 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatatat 21804198  T

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