View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_high_14 (Length: 329)
Name: NF15937_high_14
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_high_14 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 329
Target Start/End: Original strand, 4891224 - 4891547
Alignment:
| Q |
9 |
tcgaagaaaattgaccagaaactagaaaccgtgctataaagacgatacgaaagcatgtcttgttctatgataaattggaacatcaatctcttaaattggg |
108 |
Q |
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| T |
4891224 |
tcgaagtaaattgaccagaaactagaaaccgtgctataaagaggatacgaaagcaagtcttgttctatgataaattggaacatcaatctcttaaattgtg |
4891323 |
T |
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| Q |
109 |
aaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatcttcaaactcatcatcaactagctggttatctgatctg |
208 |
Q |
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| T |
4891324 |
aaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatcttcaaactcatcatcaactagctggttatctgatctg |
4891423 |
T |
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| Q |
209 |
g---taagaaatgnnnnnnnncttcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttat |
305 |
Q |
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| T |
4891424 |
gtaataagaaatgttttttttcttcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttat |
4891523 |
T |
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| Q |
306 |
tcattatagttttgtgttttgttt |
329 |
Q |
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| T |
4891524 |
tcattatagttttgtgttttgttt |
4891547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 74 - 215
Target Start/End: Original strand, 4916155 - 4916296
Alignment:
| Q |
74 |
tatgataaattggaacatcaatctcttaaattgggaaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatctt |
173 |
Q |
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| T |
4916155 |
tatgctaaattggaataccaatctctgaaattgttaagcaaaaggtgttagcttgatttaataatatcaatagttattatggaaaaattaaacacatctt |
4916254 |
T |
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| Q |
174 |
caaactcatcatcaactagctggttatctgatctggtaagaa |
215 |
Q |
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| T |
4916255 |
caaatgcatcatcaactagctggctatctcattttgtaagaa |
4916296 |
T |
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