View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15937_high_19 (Length: 300)

Name: NF15937_high_19
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15937_high_19
NF15937_high_19
[»] chr1 (3 HSPs)
chr1 (90-289)||(3771994-3772193)
chr1 (98-186)||(23765644-23765732)
chr1 (90-178)||(27394221-27394311)
[»] chr7 (2 HSPs)
chr7 (90-178)||(39474601-39474689)
chr7 (90-122)||(14746624-14746656)
[»] chr4 (3 HSPs)
chr4 (91-178)||(34104807-34104894)
chr4 (98-178)||(46734743-46734823)
chr4 (91-162)||(56338100-56338171)
[»] chr5 (2 HSPs)
chr5 (91-186)||(35636675-35636770)
chr5 (91-178)||(35132102-35132188)
[»] chr2 (1 HSPs)
chr2 (98-157)||(11675598-11675657)
[»] chr6 (2 HSPs)
chr6 (90-120)||(17720298-17720328)
chr6 (90-174)||(29824140-29824224)
[»] chr3 (2 HSPs)
chr3 (91-167)||(1660644-1660720)
chr3 (90-154)||(38356295-38356359)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 3771994 - 3772193
Alignment:
Q  90 gaagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcagacaatcattca 189  Q
    |||||||||||||  |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3771994 gaagaatcaaaaagaaaatatattaacaacgacattggaacctctttagtattaggtgtactaaaaagaccactccaagatacaatcagacaatcattca 3772093  T
Q  190 tgaaaagttaatcaaaaggaaaatcaacaaaactatttattttttaaatgaaattatttgtattttcgtattgttcatcatctactacgcatattcttcg 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3772094 tgaaaagttaatcaaaaggaaaatcaacaaaactatttattttttaaatgaaattatttgtattttcgtattgttcatcatctactacgcatatttttcg 3772193  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 23765644 - 23765732
Alignment:
Q  98 aaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcagacaatcat 186  Q
    |||||||  ||||||||||||||||| || |||||| |||  || ||||||||||||||| ||||||||||||||||| || |||||||    
T  23765644 aaaaatggtatatattaacaacgacagtggaacctcattactataaggtgtactaaaaaggccactccaagatacaataagtcaatcat 23765732  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 27394311 - 27394221
Alignment:
Q  90 gaagaatcaaaaatgaaatatattaacaacgacat--tgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcag 178  Q
    |||||||||||||| ||||||||||||||||| ||  || ||||||  |||||  |||||||||||||||  |||||||| ||||||||||    
T  27394311 gaagaatcaaaaataaaatatattaacaacgagatggtggaacctcaatagcacaaggtgtactaaaaaggacactccaaaatacaatcag 27394221  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 39474689 - 39474601
Alignment:
Q  90 gaagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcag 178  Q
    ||||||| ||||||| ||||||||| |||||||| || ||| |||||||||  ||||||||||||||||||||||||| ||||||||||    
T  39474689 gaagaataaaaaatggaatatattatcaacgacagtggaacttctttagcacaaggtgtactaaaaagaccactccaaaatacaatcag 39474601  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 122
Target Start/End: Original strand, 14746624 - 14746656
Alignment:
Q  90 gaagaatcaaaaatgaaatatattaacaacgac 122  Q
    |||||||||||||||||||||||||||||||||    
T  14746624 gaagaatcaaaaatgaaatatattaacaacgac 14746656  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 34104807 - 34104894
Alignment:
Q  91 aagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcag 178  Q
    |||||| ||||||| ||||||||| ||| |||| || |||||||||||||  ||||||| ||||||| ||||||||| ||||||||||    
T  34104807 aagaataaaaaatggaatatattaccaatgacagtggaacctctttagcacaaggtgtattaaaaaggccactccaaaatacaatcag 34104894  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 46734823 - 46734743
Alignment:
Q  98 aaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcag 178  Q
    ||||||| ||||||| |||||||| | ||| || ||||||| || |||||||||||||||||||| |||||||||| ||||    
T  46734823 aaaaatggaatatataaacaacgagagtgacacttctttagtataaggtgtactaaaaagaccaccccaagatacagtcag 46734743  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 56338171 - 56338100
Alignment:
Q  91 aagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccac 162  Q
    |||||| ||||||| ||||||||||||||| || |||| |||||||||||  ||||||||| || |||||||    
T  56338171 aagaataaaaaatggaatatattaacaacggcagtgaatcctctttagcacaaggtgtacttaagagaccac 56338100  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 35636675 - 35636770
Alignment:
Q  91 aagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcagacaatcat 186  Q
    |||||| |||||||  |||| |||||||| ||| || |||||||||||||  ||||||| ||||||| |  ||||||||||||||||| |||||||    
T  35636675 aagaataaaaaatggtatattttaacaacaacaatggaacctctttagcacaaggtgtattaaaaaggcttctccaagatacaatcagtcaatcat 35636770  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 35132102 - 35132188
Alignment:
Q  91 aagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaatcag 178  Q
    |||||| ||||||| ||||||||| | |||| | || |||||||||||||  || | |||||||||||||||||||| ||||||||||    
T  35132102 aagaattaaaaatggaatatatta-ctacgatagtggaacctctttagcacaagatatactaaaaagaccactccaaaatacaatcag 35132188  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 11675598 - 11675657
Alignment:
Q  98 aaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaag 157  Q
    ||||||| ||||||||| |||||||| || |||||||||||||  |||||||||||||||    
T  11675598 aaaaatggaatatattatcaacgacagtggaacctctttagcacaaggtgtactaaaaag 11675657  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 120
Target Start/End: Original strand, 17720298 - 17720328
Alignment:
Q  90 gaagaatcaaaaatgaaatatattaacaacg 120  Q
    |||||||||||||||||||||||||||||||    
T  17720298 gaagaatcaaaaatgaaatatattaacaacg 17720328  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 29824140 - 29824224
Alignment:
Q  90 gaagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaagatacaa 174  Q
    ||||||||||||||| |||||||||||||| | | || |||||  ||||||| |||||||  |||| |  |||||||| ||||||    
T  29824140 gaagaatcaaaaatggaatatattaacaacaagagtggaaccttattagcataaggtgtatcaaaagggtcactccaaaatacaa 29824224  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 167
Target Start/End: Complemental strand, 1660720 - 1660644
Alignment:
Q  91 aagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaaaagaccactccaa 167  Q
    |||||| ||||||  ||||||||||||||| || |||| ||| |||||||| | |||||||||| | ||||| ||||    
T  1660720 aagaataaaaaatagaatatattaacaacggcaatgaatcctatttagcataaagtgtactaaagaaaccaccccaa 1660644  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 38356359 - 38356295
Alignment:
Q  90 gaagaatcaaaaatgaaatatattaacaacgacattgaaacctctttagcattaggtgtactaaa 154  Q
    ||||||| ||||||| ||||||||||||||| |  ||||| |||| |||||  ||||||||||||    
T  38356359 gaagaataaaaaatggaatatattaacaacggcgatgaaatctctatagcacaaggtgtactaaa 38356295  T

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