View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_high_20 (Length: 297)
Name: NF15937_high_20
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 31027679 - 31027956
Alignment:
| Q |
7 |
tcgaagaaaatattccccaaaattgaaacaaaatactagccttgcaaaattcaattcattatggtggttgttgttgagtgttttgtgttctttaattgag |
106 |
Q |
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| T |
31027679 |
tcgaacaaaatattccccaaaattgaaacaaaatactagccttgcaaaattaaattcattatgatagttgttgttgagtgttttgtgttctttaattgag |
31027778 |
T |
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| Q |
107 |
agatgggttctgggttcttcaatttcatatgaagttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31027779 |
agatgggttctgggttcttcaatttcatatgaagttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacgtcaaaatcgaaac |
31027878 |
T |
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| Q |
207 |
aaaatataaatttgcaaactcagattcattagggttgttgttgttgtgtgttctgggttcttcaaattgagagatgaa |
284 |
Q |
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| T |
31027879 |
aaaatataaacttgcaaactcagattcattagggttgttgttgttgtgtgttctgggttcttcaaattgagtgatgaa |
31027956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 284
Target Start/End: Original strand, 31034580 - 31034856
Alignment:
| Q |
7 |
tcgaagaaaatattccccaaaattgaaacaaaatactagccttgcaaaattcaattcattatggtggttgttgttgagtgttttgtgttctttaattgag |
106 |
Q |
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| T |
31034580 |
tcgaacaaaatattccccaaaattgaaacaaaataccagccttgcaaaattcaattcgttatggtagttgttgttgagtattttgtgttctttaattgag |
31034679 |
T |
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| Q |
107 |
agatgggttctgggttcttcaatttcatatgaagttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaac |
206 |
Q |
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| T |
31034680 |
agatgggttttgggttcttcaatttcatatgaagttgttgttgttaaac-ttgatgttgtgtgttacaaaattgaactaaacaaacctcaaaatcgaaac |
31034778 |
T |
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| Q |
207 |
aaaatataaatttgcaaactcagattcattagggttgttgttgttgtgtgttctgggttcttcaaattgagagatgaa |
284 |
Q |
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|||||||||| ||||||||| ||||||||| |||| |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
31034779 |
aaaatataaacttgcaaacttagattcatttgggtagttgttgttgtgtgttcttggttcttcaaattgagtgatgaa |
31034856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 31034767 - 31034893
Alignment:
| Q |
24 |
caaaattgaaacaaaatactagccttgcaaaattcaattcattatggtggttgttgttgagtgttttgtgttctttaa-ttgagagatgggttctgggtt |
122 |
Q |
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| T |
31034767 |
caaaatcgaaacaaaata-taaacttgcaaacttagattcatttgggtagttgttgttgtgtgttcttggttcttcaaattgagtgatgaattatgggtt |
31034865 |
T |
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| Q |
123 |
cttcaatttcatatgaagttgttgttgt |
150 |
Q |
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| T |
31034866 |
cttcaatttcagaggaagttgttgttgt |
31034893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 118 - 284
Target Start/End: Complemental strand, 13435638 - 13435469
Alignment:
| Q |
118 |
gggttcttcaatttcatatgaag-ttgttgttgttaaacgttgatgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaacaaaatataaa |
216 |
Q |
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|||||||||||| ||||| ||| || ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13435638 |
gggttcttcaatatcataggaaaatttttgttgttaaatgttgttgttgtgagttacaaaattgaactaaacacacctcaaaatcgaaacaaaatataac |
13435539 |
T |
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| Q |
217 |
tttgcaaactcagattcattaggg---ttgttgttgttgtgtgttctgggttcttcaaattgagagatgaa |
284 |
Q |
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| T |
13435538 |
cttgcaaactcatattcattagggaagttgttgttgttgtgtgctttgggttcttc-aattgagtgatgaa |
13435469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 32687752 - 32687680
Alignment:
| Q |
77 |
ttgttgagtgttttgtgttctttaattgagagatgggttctgggttcttcaatttcatatgaagttgttgttg |
149 |
Q |
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| T |
32687752 |
ttgttgtgtgttctatgttcttcaattgagagatgaattttggattcttcaatttcagaggaagttgtagttg |
32687680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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