View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_high_27 (Length: 238)
Name: NF15937_high_27
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4186159 - 4186375
Alignment:
| Q |
1 |
caagaactccaaaaacacaacaaacgtggcgactatggatcgctattgacggaaagatatacgacgtctctgaatgggccaaccaccatcccggtggcga |
100 |
Q |
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| T |
4186159 |
caagaactccaaaaacacaacaaacgtg-----------tcgccattgacggcaagatatacgacgtctctaaatgggccaaccaccatcccggtggcga |
4186247 |
T |
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| Q |
101 |
attccctctactcagccttgccggccaagaggttactgaagcattccttgcttnnnnnnnnnnnnnngcctacaaccgcctcaacaccttcttcaccgga |
200 |
Q |
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| T |
4186248 |
attccctctaatcagccttgccggccaagaggttactgaagcattccttgctttccaccctcccaccgcctacaaccgcctcaacaccttcttcaccgga |
4186347 |
T |
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| Q |
201 |
agttacctctgtgactgcgccgtctctg |
228 |
Q |
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|| ||||||||||||||||||||||||| |
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| T |
4186348 |
agctacctctgtgactgcgccgtctctg |
4186375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 4195179 - 4195332
Alignment:
| Q |
1 |
caagaactccaaaaacacaacaaacgtggcgact-atggatcgctattgacggaaagatatacgacgtctctgaatgggccaaccaccatcccggtggcg |
99 |
Q |
| |
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|||||||| ||||||||||||| || ||||| ||||||| | |||||||| ||||| |||||||| || |||||||||||||||||||||| |||| |
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| T |
4195179 |
caagaacttcaaaaacacaacactcgcggcgatgcatggatctccattgacggcaagatctacgacgtttcaaaatgggccaaccaccatcccggcggcg |
4195278 |
T |
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| Q |
100 |
aattccctctactcagccttgccggccaagaggttactgaagcattccttgctt |
153 |
Q |
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| | ||||| |||| ||| ||||||||||| || || || |||||||| |||| |
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| T |
4195279 |
agcttcctctcctcaacctcgccggccaagatgtcaccgatgcattcctcgctt |
4195332 |
T |
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