View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_high_28 (Length: 238)
Name: NF15937_high_28
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 42488793 - 42488907
Alignment:
| Q |
21 |
aaaaatgagacccacactagttgtaaaacaagatcgaccactgtaagcttctcaccggcctgttcttatgctgtcacgattaacaatcacaacaccatca |
120 |
Q |
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| T |
42488793 |
aaaaatgagacccacactagttgtaaacccaaatcgaagttt-tacgcttaccaccgacctgttcttctgccgtcgcgattaacaatcactacaccatca |
42488891 |
T |
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| Q |
121 |
agaacctcgtggtgga |
136 |
Q |
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|||||| ||||||||| |
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| T |
42488892 |
agaaccccgtggtgga |
42488907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 25922591 - 25922534
Alignment:
| Q |
79 |
cctgttcttatgctgtcacgattaacaatcacaacaccatcaagaacctcgtggtgga |
136 |
Q |
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| T |
25922591 |
cctgttcttctgccgtcgcgtttaacaatcacaacaccatcaagaacctcgtggtgga |
25922534 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 41662891 - 41663005
Alignment:
| Q |
21 |
aaaaatgagacccacactagttgtaaaacaagatcgaccactgtaagcttctcaccggcctgttcttatgctgtcacgattaacaatcacaacaccatca |
120 |
Q |
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| T |
41662891 |
aaaaatgagacccacactagttgtaaacccaaatcgaagttt-tacgcttaccaccgacctgttcttctgccgtcgcgattaacaatcactacaccatca |
41662989 |
T |
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| Q |
121 |
agaacctcgtggtgga |
136 |
Q |
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| T |
41662990 |
agaaccccgtggtgga |
41663005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 38616858 - 38616972
Alignment:
| Q |
21 |
aaaaatgagacccacactagttgtaaaacaagatcgaccactgtaagcttctcaccggcctgttcttatgctgtcacgattaacaatcacaacaccatca |
120 |
Q |
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||||||||||||||||||||||||||| | | ||||| | || |||| ||||| ||||||||| ||| ||| |||||||||||||| ||||||||| |
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| T |
38616858 |
aaaaatgagacccacactagttgtaaacccaaatcgaagttt-tacgcttaccaccgacctgttcttctgccgtcgcgattaacaatcactacaccatca |
38616956 |
T |
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| Q |
121 |
agaacctcgtggtgga |
136 |
Q |
| |
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|||||| ||||||||| |
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| T |
38616957 |
agaaccccgtggtgga |
38616972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 40806407 - 40806293
Alignment:
| Q |
21 |
aaaaatgagacccacactagttgtaaaacaagatcgaccactgtaagcttctcaccggcctgttcttatgctgtcacgattaacaatcacaacaccatca |
120 |
Q |
| |
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||||||||||||||||||||||||||| | | ||||| | || |||| ||||| ||||||||| ||| ||| |||||||||||||| ||||||| | |
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| T |
40806407 |
aaaaatgagacccacactagttgtaaacccaaatcgaagttt-tacgcttaccaccgacctgttcttctgccgtcgcgattaacaatcactacaccataa |
40806309 |
T |
|
| Q |
121 |
agaacctcgtggtgga |
136 |
Q |
| |
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|||||| ||||||||| |
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|
| T |
40806308 |
agaaccccgtggtgga |
40806293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 30701102 - 30701163
Alignment:
| Q |
167 |
ttgtacaatgtctctcgagttttgacgataacaaaagtataaaattacaattggacatgctaa |
229 |
Q |
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||||||||||||||| |||||||| |||||| ||||||||||| ||||||||| ||||||| |
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| T |
30701102 |
ttgtacaatgtctctgaagttttgatgataac-aaagtataaaagaacaattggatatgctaa |
30701163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 19691561 - 19691640
Alignment:
| Q |
150 |
ttgaattaaaatgtgttttgtacaatgtctctcgagttttgacgataacaaaagtat-aaaattacaattggacatgctaa |
229 |
Q |
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||||| |||||| |||||||||||||||||| |||||||| ||| |||||| ||| |||| |||||||||| ||||||| |
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| T |
19691561 |
ttgaactaaaataagttttgtacaatgtctctaaagttttgatgattacaaaa-tataaaaagtacaattggatatgctaa |
19691640 |
T |
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