View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_high_31 (Length: 236)
Name: NF15937_high_31
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 4891794 - 4891975
Alignment:
| Q |
1 |
cagattctgtcttttgactgtaccttaaatacaaaaaagaacaaggttgttccattgtcacaaacagaattacctcaaaatagaaaagggtcattgcaaa |
100 |
Q |
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| T |
4891794 |
cagattctgtcttttgactgtaccttaaatacaaaaaagaacaaggttgttccattgtcacaaacagaattacctcaaaatagaaaagggtcattgcaaa |
4891893 |
T |
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| Q |
101 |
aacaaaacattgttgaaactataaagccacaaggacaaggaactaagaggtctgtggctcataatcaggaccatatcatagc |
182 |
Q |
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| T |
4891894 |
aacaaaacattgttgaaactataaagccacaaggacaaggaactaagaggtctgtggctcataatcaggaccatatcatagc |
4891975 |
T |
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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 4916665 - 4916735
Alignment:
| Q |
97 |
caaaaacaaaacattgttgaaactataaagccacaaggacaaggaactaagaggtctgtggctcataatca |
167 |
Q |
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| T |
4916665 |
caaaatcaaaacattgttgaaactaaaaatacacaaggacaagggactaagaggtctgttgctcatgatca |
4916735 |
T |
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