View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15937_high_5 (Length: 465)
Name: NF15937_high_5
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 8e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 331 - 449
Target Start/End: Original strand, 6688148 - 6688266
Alignment:
| Q |
331 |
atagaaggggatggctctccatgtcgagaagacaaaataagaggatagaatcgccacaaaacacaaataactttgtaccagttgtgcaaaataattagcc |
430 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6688148 |
atagaaggggatggctctccatgtcgaaaagacaaaataagagaatagaatcgccacaaaacacaaataactttgtaccagttgtgcaaaataattagcc |
6688247 |
T |
|
| Q |
431 |
tagtgagtcacaaagaagg |
449 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6688248 |
tagtgagtcacaaagaagg |
6688266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 6687825 - 6687935
Alignment:
| Q |
18 |
gaacaatagaatcaagatataatcttcagctcctgcatgcatcatgtgagattgagatacatgtaaaaagatcgcttctcatctaaatcccaatgtgaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6687825 |
gaacaatagaatcaagatataatcttcagctcctgcatacatcatgtgagattgagatacatgtaaaaagatcacttctcatctaaatcccaatgtgaag |
6687924 |
T |
|
| Q |
118 |
acctggtggtg |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
6687925 |
acctggtggtg |
6687935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 6687987 - 6688081
Alignment:
| Q |
180 |
attgaatacaacaatggatttgaaatataagcataaatatttttgagaaaactaaaacatatacacgcacatatgtagcaaagatatgcaagggt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6687987 |
attgaatacaacaatggatttgaaatataaacataaatatttttgagaaaactaaaacatatacacgcacatatgtagcaaagatatgcaagggt |
6688081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University