View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_high_6 (Length: 459)
Name: NF15937_high_6
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Complemental strand, 8457273 - 8456851
Alignment:
| Q |
19 |
ccatgtccttgggtggtaccaacacgatgattgataactatatcagccattgctctgactttctgttgcttcaacttttgaagtaaagcttttaattgat |
118 |
Q |
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| T |
8457273 |
ccatgtccttgggtggtaccaacacgatgattgataactatatcagccattgctctgactttctgttgcttcaacttttgaagtaaagcttttaattgat |
8457174 |
T |
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| Q |
119 |
gctcagaaccatatttactattaagagagtaaaggttctgaggagtgtaacctgcaaaacagaggaaagacaataaattattgcactttaagaccctaga |
218 |
Q |
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| T |
8457173 |
gctcagaaccatatttactattaagagagtaaaggttctgaggagtgtaacctgcaaaacagaggaaagacaataaattattgcacttcaagaccctaga |
8457074 |
T |
|
| Q |
219 |
atcgtatgcctaatacttcaaaggcagttgattttaccttcaggcgagaaggaatgagttggcggtggcaaccatgctgaagtgattccagctttagcta |
318 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457073 |
atcgtatgcctaatacttcaaaggcagttgatttaaccttcaggcgagaaggaatgagttggcggtggcaaccatgctgaagtgattccagctttagcta |
8456974 |
T |
|
| Q |
319 |
tgtccggaactttgctttctaaatttgcccaccaatcgtatttgtgagactcccagttaaatgcctacaaagcaattttcttcaattgtgagatgtattg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8456973 |
tgtccggaactttgctttctaaatttgcccaccaatcgtatttgtgagactcccagttaaatgcctacaaagcaattttcttcaattgtgagatttattg |
8456874 |
T |
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| Q |
419 |
tatgcgaagttcacgtcagactt |
441 |
Q |
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| T |
8456873 |
tatgcgaagttcacgtcagactt |
8456851 |
T |
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