View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15937_high_7 (Length: 385)

Name: NF15937_high_7
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15937_high_7
NF15937_high_7
[»] chr7 (1 HSPs)
chr7 (67-107)||(31448364-31448404)
[»] scaffold0263 (1 HSPs)
scaffold0263 (64-107)||(13370-13413)
[»] scaffold0002 (1 HSPs)
scaffold0002 (64-107)||(91998-92041)
[»] chr3 (2 HSPs)
chr3 (66-107)||(42380550-42380591)
chr3 (66-107)||(42409264-42409305)
[»] chr8 (4 HSPs)
chr8 (60-94)||(36430472-36430506)
chr8 (62-99)||(15196543-15196580)
chr8 (66-99)||(38125627-38125660)
chr8 (63-96)||(43980438-43980471)
[»] chr1 (1 HSPs)
chr1 (65-99)||(46836420-46836454)
[»] scaffold0064 (1 HSPs)
scaffold0064 (66-107)||(22408-22449)
[»] scaffold0036 (1 HSPs)
scaffold0036 (62-107)||(90172-90217)
[»] scaffold0009 (1 HSPs)
scaffold0009 (62-107)||(143386-143431)
[»] chr4 (3 HSPs)
chr4 (66-99)||(32564872-32564905)
chr4 (64-100)||(7209100-7209136)
chr4 (67-107)||(32564829-32564869)
[»] chr2 (2 HSPs)
chr2 (66-107)||(12457053-12457094)
chr2 (62-99)||(33810612-33810649)


Alignment Details
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 31448364 - 31448404
Alignment:
Q  67 tactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  31448364 tactcattccgtccctatatgtaagcaccctttgcatctaa 31448404  T

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Target: scaffold0263 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 13370 - 13413
Alignment:
Q  64 aaatactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  13370 aaatactccctccgtccctatatgtaagcaccttttgcatctaa 13413  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 91998 - 92041
Alignment:
Q  64 aaatactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    ||||||||| |||||||||||||||||||||| |||||||||||    
T  91998 aaatactccctccgtccctatatgtaagcaccttttgcatctaa 92041  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 42380550 - 42380591
Alignment:
Q  66 atactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  42380550 atactccatccgtccctatatgtaagcaccctttgcctctaa 42380591  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 42409264 - 42409305
Alignment:
Q  66 atactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  42409264 atactccatccgtccctatatgtaagcaccctttgcctctaa 42409305  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 36430506 - 36430472
Alignment:
Q  60 atttaaatactccttccgtccctatatgtaagcac 94  Q
    ||||||||||||| |||||||||||||||||||||    
T  36430506 atttaaatactccctccgtccctatatgtaagcac 36430472  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 15196580 - 15196543
Alignment:
Q  62 ttaaatactccttccgtccctatatgtaagcacccttt 99  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  15196580 ttaaatactccctccgtccctatatctaagcacccttt 15196543  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 38125660 - 38125627
Alignment:
Q  66 atactccttccgtccctatatgtaagcacccttt 99  Q
    ||||||| ||||||||||||||||||||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttt 38125627  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 43980438 - 43980471
Alignment:
Q  63 taaatactccttccgtccctatatgtaagcaccc 96  Q
    |||||||||| |||||||||||||||||||||||    
T  43980438 taaatactccctccgtccctatatgtaagcaccc 43980471  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 99
Target Start/End: Complemental strand, 46836454 - 46836420
Alignment:
Q  65 aatactccttccgtccctatatgtaagcacccttt 99  Q
    |||||||||||||||||||||| ||||||||||||    
T  46836454 aatactccttccgtccctatatctaagcacccttt 46836420  T

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Target: scaffold0064 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 22449 - 22408
Alignment:
Q  66 atactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    |||||||||||||||||||| ||||||||| || ||||||||    
T  22449 atactccttccgtccctatacgtaagcacctttagcatctaa 22408  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 90217 - 90172
Alignment:
Q  62 ttaaatactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    ||||||||||| |||||  ||||||||||||||||||||| |||||    
T  90217 ttaaatactccctccgtttctatatgtaagcaccctttgcctctaa 90172  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 143431 - 143386
Alignment:
Q  62 ttaaatactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    |||| |||||| |||||||||||||||||||| ||||||| |||||    
T  143431 ttaattactccctccgtccctatatgtaagcatcctttgcctctaa 143386  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 32564905 - 32564872
Alignment:
Q  66 atactccttccgtccctatatgtaagcacccttt 99  Q
    ||||||| ||||||||||||||||||||||||||    
T  32564905 atactccctccgtccctatatgtaagcacccttt 32564872  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 7209136 - 7209100
Alignment:
Q  64 aaatactccttccgtccctatatgtaagcaccctttg 100  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  7209136 aaatactccctccgtccctatatgtaagcactctttg 7209100  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 32564829 - 32564869
Alignment:
Q  67 tactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    |||||| ||||||||||||||||||||| |||||| |||||    
T  32564829 tactccctccgtccctatatgtaagcactctttgcctctaa 32564869  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 12457094 - 12457053
Alignment:
Q  66 atactccttccgtccctatatgtaagcaccctttgcatctaa 107  Q
    ||||||| || ||||||||||||||||||||||||| |||||    
T  12457094 atactccctctgtccctatatgtaagcaccctttgcctctaa 12457053  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 33810612 - 33810649
Alignment:
Q  62 ttaaatactccttccgtccctatatgtaagcacccttt 99  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  33810612 ttaaatactcccttcgtccctatatgtaagcacccttt 33810649  T

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