View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15937_low_1 (Length: 582)

Name: NF15937_low_1
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15937_low_1
NF15937_low_1
[»] chr8 (2 HSPs)
chr8 (1-571)||(26569537-26570107)
chr8 (271-330)||(26571417-26571476)
[»] chr7 (1 HSPs)
chr7 (69-111)||(39924795-39924837)


Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 26569537 - 26570107
Alignment:
Q  1 tcacacaagtgttgttaactcctaagttactcaacgtcatttgatgaattcttcgggtcattgcatcatcatccacaacaagtgctgttaacttggatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26569537 tcacacaagtgttgttaactcctaagttactcaacgtcatttgatgaattcttcgggtcattgcatcatcatccacaacaagtgctgttaacttggatgc 26569636  T
Q  101 aaagttttgagatggtgatgccatattccgttttggtctttaggaggaggaggaagagatggtggtttggagataggtaaagttagtgatgagaagtagt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26569637 aaagttttgagatggtgatgccatattcggttttggtctttaggaggaggaggaagagatggtggtttggagataggtaaagttagtgatgaaaagtagt 26569736  T
Q  201 aaaatacataggtacaaacagatgagtattttcccatttatacgcaccaaatctaaannnnnnnncaacattttgtttgattctcatactgaattgtaat 300  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||    
T  26569737 aaaatacataggtacaaacagatgagtgttttcccatttatacgcaccaaatctaattttttttctaacattttgtttgattctcatactgaattgtaat 26569836  T
Q  301 gatctacaacaagagtttctaaattggatgggtggtccttgctaatactttttgaggctgtagcatttgatatagcattattagcatctatatatataat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26569837 gatctacaacaagagtttctaaattggatgggtggtccttgctaatactttttgaggctgtagcatttgatatagcattattagcatctatatatataat 26569936  T
Q  401 gcaaataactctaattctttgtttgtac-nnnnnnnnntccaattcatcgtgaatatatttttaaaagagttggaggttctaagttctaacccgtacaaa 499  Q
    ||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26569937 gcaaataactctaattctttgtttgtacaaaataaaaatccaattcatagtgaatatatttttaaaagagttggaggttctgagttctaacccgtacaaa 26570036  T
Q  500 gagtaatatattaacctaataaactaactattactcccttcgtcccataataagtgggtttcttttattcat 571  Q
    |||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||| ||||||||||    
T  26570037 gagtaatatattaacctaataaactaactactactcccttcgtctcctaataagtgagttt-ttttattcat 26570107  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 26571417 - 26571476
Alignment:
Q  271 ttttgtttgattctcatactgaattgtaatgatctacaacaagagtttctaaattggatg 330  Q
    |||||||||||| ||||||| |||| ||||||||||| |||||||||| |||||| ||||    
T  26571417 ttttgtttgattttcatactaaattataatgatctacgacaagagtttttaaattagatg 26571476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 39924837 - 39924795
Alignment:
Q  69 tcatccacaacaagtgctgttaacttggatgcaaagttttgag 111  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||    
T  39924837 tcatccacaaccagtgctgttagcttggatacaaagttttgag 39924795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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