View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_low_11 (Length: 360)
Name: NF15937_low_11
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 344
Target Start/End: Original strand, 1671276 - 1671615
Alignment:
| Q |
5 |
ttggacaacagaataagaatcttactctttcgacagagtcgagtgccttgactccagaaatcttgagactatcagtaatatcttcaagtggtttttgcac |
104 |
Q |
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| T |
1671276 |
ttggacaacagaataagaatcttactctttcgacagagtcgagtgccttgactccagaaatcttgagactatcagtaatatcttcaagtggtttttgcac |
1671375 |
T |
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| Q |
105 |
ttctctaatcgccttattgtcaataggaagaccatatctcaacaatgccccagggtccttaattggcggtccagatatcaatacagacagatcaggtaac |
204 |
Q |
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| T |
1671376 |
ttctctaatcgccttattgtcaataggaagaccatatctcaacaatgccccagggtccttaattggtggtccagatatcaatacagacagatcaggtaac |
1671475 |
T |
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| Q |
205 |
acggggttagctgcatgtgcatcgttaggcaaccccaacgtaggaactcctgttattaacccgaccgcaagcgctaaagatatggcgcattgctttaagc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1671476 |
acggggttagctgcatgtgcatcgttaggcaaccccaacgtaggaactcctgttattaacccgaccgcaagcgctaaagatatcgcgcattgctttaagc |
1671575 |
T |
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| Q |
305 |
aaaatgactttcctttctgcaccaaaatttaacacaataa |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1671576 |
aaaatgactttcctttctgcaccaaaatttaacacaataa |
1671615 |
T |
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