View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15937_low_12 (Length: 356)

Name: NF15937_low_12
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15937_low_12
NF15937_low_12
[»] chr7 (4 HSPs)
chr7 (157-341)||(13937597-13937781)
chr7 (157-341)||(39286628-39286812)
chr7 (157-341)||(9987422-9987605)
chr7 (161-337)||(17218303-17218479)
[»] chr3 (2 HSPs)
chr3 (157-341)||(15259680-15259864)
chr3 (161-337)||(33590845-33591020)
[»] chr2 (1 HSPs)
chr2 (157-329)||(31140328-31140500)
[»] chr4 (5 HSPs)
chr4 (13-172)||(18747729-18747886)
chr4 (14-134)||(52367702-52367822)
chr4 (195-336)||(30231040-30231180)
chr4 (203-285)||(18748671-18748751)
chr4 (262-306)||(18748626-18748670)
[»] chr8 (3 HSPs)
chr8 (8-137)||(24252748-24252877)
chr8 (157-341)||(14330807-14330990)
chr8 (196-306)||(24251537-24251645)
[»] chr1 (2 HSPs)
chr1 (8-137)||(23247912-23248041)
chr1 (195-336)||(23246701-23246840)
[»] scaffold0094 (1 HSPs)
scaffold0094 (161-341)||(6810-6989)
[»] chr5 (2 HSPs)
chr5 (157-341)||(21724279-21724462)
chr5 (157-341)||(21804015-21804198)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 13937597 - 13937781
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13937597 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 13937696  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13937697 cttgtatttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatatat 13937781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 39286628 - 39286812
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39286628 tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 39286727  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39286728 cttgtttttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatatat 39286812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 9987422 - 9987605
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  9987422 tttcaaggtattaccattcactctctctattataatatatgttcttttcaacaaatcaaccatgttcccataaacttgtgcctgattctttgttcaattt 9987521  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||| ||||||  |||| |||||||||||||    
T  9987522 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctagattcatgtttgatgttgaaatatat 9987605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 17218479 - 17218303
Alignment:
Q  161 aaggtattactatccactctctctatta-taatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttctt 259  Q
    |||||||||| || |||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||   ||| |     
T  17218479 aaggtattaccattcactctctctattaataatatgtgttatcttcaaaaaatcaaccatgttcccataaacttgtacttgattcttggttttgttt-ta 17218381  T
Q  260 gtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat 337  Q
    | |||||||||||||||||| |||||  |||||| |||||| || |  | ||||||||||||  |||| |||||||||    
T  17218380 gggtttattttgttttacttattagggattttagagtgctttaccatctagacctggattcatgtttgctgttgaaat 17218303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 157 - 341
Target Start/End: Complemental strand, 15259864 - 15259680
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15259864 tttcaaggtattactattcactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacttgatttttggttcaattt 15259765  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15259764 cttgtgtttattttgttttacttattagggtttttagtgttcttaactacatggacctggattcacctttgttgttgaaatatat 15259680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 337
Target Start/End: Original strand, 33590845 - 33591020
Alignment:
Q  161 aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg 260  Q
    ||||||| || || |||||||||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| | |    
T  33590845 aaggtatcaccattcactctctctattacaatatgtattctcttcaacaaatcaaccatgtttccataaacttgtacctgattcttagttcaattt-tag 33590943  T
Q  261 tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaat 337  Q
      |||||||| |||||||| ||| | ||||| |||||||||||||| | ||||||||||||| |||| |||||||||    
T  33590944 gatttattttattttacttattaaggtttttggtgtgcttaactacctagacctggattcacgtttgctgttgaaat 33591020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 157 - 329
Target Start/End: Original strand, 31140328 - 31140500
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31140328 tttcaaggtattactacccactctctctattataatgggtgttctcttcaacaaatcaaccatgttcccataaatttgtacctgatttttggttcaattt 31140427  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgtt 329  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  31140428 cttgtgtttattttgttttacttaatagggtttttagtgtgcttaactacatggacctggattcacctttgtt 31140500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 7e-74; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 18747886 - 18747729
Alignment:
Q  13 actctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtggataat 112  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18747886 actctccaagaaagcttaaaaactct--gaagttctgttcagttgaatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtggataat 18747789  T
Q  113 aattaataacaatttcatctatgatcactactaaaatagagtgatttcaaggtattacta 172  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18747788 aattaataacaatttcatctatgatcactactaaaatacagtgatttcaaggtattacta 18747729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 52367702 - 52367822
Alignment:
Q  14 ctctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtggataata 113  Q
    ||||||||||||||||| ||| ||||||||||||| ||| |||||||| ||||||||||| |||| ||||||||||| ||||||| |||||||||| |||    
T  52367702 ctctccaagaaagcttataaattctttgaagttctcttctgttggatggtagtgtccactgtatggccaaatagcctgcatttttatgtagtggatgata 52367801  T
Q  114 attaataacaatttcatctat 134  Q
    ||||||||||| |||| ||||    
T  52367802 attaataacaacttcagctat 52367822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 30231040 - 30231180
Alignment:
Q  195 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt 294  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| ||||  |||||||||||| | | |||||||||||||||||| ||||||||||| ||    
T  30231040 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacatgatgcttggttcaattt-tagggtttattttgttttacttattaggattttttgt 30231138  T
Q  295 gtgcttaactacatggacctggattcacctttgttgttgaaa 336  Q
    ||| |||||||| | ||| ||||||||  |||| ||||||||    
T  30231139 gtgtttaactacctagacttggattcatgtttgctgttgaaa 30231180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 18748751 - 18748671
Alignment:
Q  203 ttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttagg 285  Q
    ||||||||||| | |||||| |||||||||||||||||||| || ||||||||| | | |||||||||||||||||| |||||    
T  18748751 ttcaacaaatctagcatgttaccataaacttgtacctgattctt-gttcaattt-tagggtttattttgttttacttattagg 18748671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 18748670 - 18748626
Alignment:
Q  262 gtttattttgttttacttgttaggatttttagtgtgcttaactac 306  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||    
T  18748670 gtttattttgttttacttattagggtttttagtgtgcttaactac 18748626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 24252748 - 24252877
Alignment:
Q  8 attatactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtgg 107  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24252748 attatgctctccaagaaagcttaaaaactctttgaagttctcttcaattggatgatagtatccactttatggccaaatagccttcatttttgtgtagtgg 24252847  T
Q  108 ataataattaataacaatttcatctatgat 137  Q
    ||||||||||||||||| || | |||||||    
T  24252848 ataataattaataacaactttagctatgat 24252877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 14330807 - 14330990
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  ||||||||||||||||||||||||||||||||  |||||| || |||||||||    
T  14330807 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgttcccataaacttgtgactgattctttgttcaattt 14330906  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||| ||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| |||||||||||||    
T  14330907 c-agggtttatttttttttatttcttagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatatat 14330990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 24251537 - 24251645
Alignment:
Q  196 tgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagtg 295  Q
    |||| ||||||||||||||| |||||| ||||||||||||||||| || ||| |||||||| | | |||||||||||||||||| ||||| |||||||||    
T  24251537 tgttttcttcaacaaatcaagcatgttaccataaacttgtacctggttcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagtg 24251634  T
Q  296 tgcttaactac 306  Q
    |||||||||||    
T  24251635 tgcttaactac 24251645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 23247912 - 23248041
Alignment:
Q  8 attatactctccaagaaagcttaaaaactctttgaagttctgttcagttggatgatagtgtccactttatgcccaaatagccttcatttttgtgtagtgg 107  Q
    ||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23247912 attatgctctccaagaaagcttaaaaactctttgaagttctcttaagttggatgatagtatccactttatggccaaatagccttcatttttgtgtagtgg 23248011  T
Q  108 ataataattaataacaatttcatctatgat 137  Q
    ||||||||||||||||| || | |||||||    
T  23248012 ataataattaataacaacttaagctatgat 23248041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 336
Target Start/End: Original strand, 23246701 - 23246840
Alignment:
Q  195 gtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttgtgtttattttgttttacttgttaggatttttagt 294  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||||| ||| |||||||| | | |||||||||||||||||| ||||| ||||||||    
T  23246701 gtgttttcttcaacaaatcaagcatgttaccataaacttgtacctgattcttg-ttcaattt-tagggtttattttgttttacttattagggtttttagt 23246798  T
Q  295 gtgcttaactacatggacctggattcacctttgttgttgaaa 336  Q
    |||||||||||| | ||| | ||||||  |||| ||||||||    
T  23246799 gtgcttaactacctagacatagattcatgtttgatgttgaaa 23246840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 341
Target Start/End: Original strand, 6810 - 6989
Alignment:
Q  161 aaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaatttcttg 260  Q
    |||||||||| || |||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| | |    
T  6810 aaggtattaccattcactctctatattataatatgtgttctcttcaataaatcaaccatgttcccataaacttgtacctgattcttggttcaattt-tag 6908  T
Q  261 tgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
     |||||||||||||||||| ||||| ||||||| || ||| || || | ||||||||||||  ||| ||||||||||||||    
T  6909 ggtttattttgttttacttattagggtttttagcgtcctttaccacctagacctggattcatgtttattgttgaaatatat 6989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 21724279 - 21724462
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||| || |||||||||    
T  21724279 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt 21724378  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| |||||||||||||    
T  21724379 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatatat 21724462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 157 - 341
Target Start/End: Original strand, 21804015 - 21804198
Alignment:
Q  157 tttcaaggtattactatccactctctctattataatgtgtgttctcttcaacaaatcaaccatgttcccataaacttgtacctgatttttggttcaattt 256  Q
    |||||||||||||| || |||||||| ||||||||| ||||||||  |||||||||||||||||| ||||||||||||| ||||||| || |||||||||    
T  21804015 tttcaaggtattaccattcactctctatattataatatgtgttcttgtcaacaaatcaaccatgtacccataaacttgtgcctgattctttgttcaattt 21804114  T
Q  257 cttgtgtttattttgttttacttgttaggatttttagtgtgcttaactacatggacctggattcacctttgttgttgaaatatat 341  Q
    |  | ||||||||||||||| || ||||| |||||||||||||||||||| | ||||||||||||  |||| |||||||||||||    
T  21804115 c-agggtttattttgttttatttattagggtttttagtgtgcttaactacctagacctggattcatgtttgatgttgaaatatat 21804198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University