View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_low_13 (Length: 350)
Name: NF15937_low_13
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 150 - 331
Target Start/End: Original strand, 37941091 - 37941274
Alignment:
| Q |
150 |
tgtactcaagtagactaagttgataatcatgcaaggaaggaatatatcttttttgtatata--gaaaggaagaaatatatctagatctcgttttttctaa |
247 |
Q |
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| T |
37941091 |
tgtactcaagtagactaagttgataatcatgcaaggaagaaatatatcttttttgtatatatagaaaggaagaaatatatctagatctcattttt-ctaa |
37941189 |
T |
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| Q |
248 |
gaacaaaatcaatttt-attatatgaaaatgagagaagtatgatgagtattaaaccaccaaccggagaaaagtacaagagatact |
331 |
Q |
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| T |
37941190 |
gagcaaaatcaatttttattatatgaaaatgagagaagtgtgatgagtattaaaccaccaaccggagaaaagtacaagagatact |
37941274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37940412 - 37940542
Alignment:
| Q |
1 |
tcacttgtaatctggcttttcttgtttactgttgtgaagagaaggtttgtgtcattagctgaattagatacaaagaatttataacgtattacttatttaa |
100 |
Q |
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| T |
37940412 |
tcacttgtaatctggcttttcttgtttactgttgtgaagagaag-tttgtgtcattagctgaattagatacaaaggatttataacatattacttatttaa |
37940510 |
T |
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| Q |
101 |
gtatatattagaaatcctttcttatctggttt |
132 |
Q |
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| T |
37940511 |
gtatatattagaaagcctttcttatctggttt |
37940542 |
T |
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