View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_low_17 (Length: 320)
Name: NF15937_low_17
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 88 - 304
Target Start/End: Original strand, 54963230 - 54963446
Alignment:
| Q |
88 |
tccactagccattgccaatcctacttctgccatcattcctcctactgcagacgatgatacagtccccatcactctcagacaattatgtcaatctcatgtt |
187 |
Q |
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| T |
54963230 |
tccactagccattgccaatcctacttctgccatcattcctcctactgcagacgatgatacagtccccatcactctcagacaattatgtcaatctcatgtt |
54963329 |
T |
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| Q |
188 |
cccgaccaattactccaaaggcaatttcaactctaatttccattattctcaaattaatttcaattttattatttttccacacaatctaatctgctttatc |
287 |
Q |
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| T |
54963330 |
cccgaccaattactccaaaggcaatttcaactctaatttccattattctcaaattaatttcaattttattatttttccacacaatctaatctgctttatc |
54963429 |
T |
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| Q |
288 |
attattaattttgtaat |
304 |
Q |
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||||||||||||||||| |
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| T |
54963430 |
attattaattttgtaat |
54963446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 25143306 - 25143351
Alignment:
| Q |
8 |
atctagatctagatccacaaccgggtctaaaagctaccaccccgag |
53 |
Q |
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| T |
25143306 |
atctagatctagatccaaatccgggtctaaaaactaccaccacgag |
25143351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 31039404 - 31039449
Alignment:
| Q |
8 |
atctagatctagatccacaaccgggtctaaaagctaccaccccgag |
53 |
Q |
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||||||||||||||||| | |||||||||||| |||||||| |||| |
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| T |
31039404 |
atctagatctagatccaaatccgggtctaaaaactaccaccacgag |
31039449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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