View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15937_low_18 (Length: 316)
Name: NF15937_low_18
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 18829680 - 18829375
Alignment:
| Q |
1 |
cattctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcctcagaatccttctctaccgccaccgtgttcattagtgggctttgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18829680 |
cattctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcctcagaatccttctctaccgccaccgtgttcattagtgggctttgttt |
18829581 |
T |
|
| Q |
101 |
gggtgcagagtagttgtttgttgtgctaacatccgagaacgttgttgtggagaaatcatcgctatcatcgatgctacaaacggcgccatatccttcacct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18829580 |
gggtgcagagtagttgtttgttgtgctaacatccgagaacgtcgtggtggagaaatcatcgctatcatcgatgctacaaacggcgccatatccttcacct |
18829481 |
T |
|
| Q |
201 |
gaagttgtagttgaagaacccttactacttgggtttgtgatcctttgcttaatgaaatttttgggtttttgggttggctttggctcgtgtacttcaattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18829480 |
gaagttgtagttgaagaacccttactacttgggtttgtgatcctttgcttaatgaattttttgggtttttgggttggctttggctcgtgtacttgaattg |
18829381 |
T |
|
| Q |
301 |
cctttg |
306 |
Q |
| |
|
| |||| |
|
|
| T |
18829380 |
cttttg |
18829375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 5 - 208
Target Start/End: Original strand, 18837709 - 18837912
Alignment:
| Q |
5 |
ctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcctcagaatccttctctaccgccaccgtgttcattagtgggctttgtttgggt |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||| || || |||| ||||| ||||||||| || ||| || |
|
|
| T |
18837709 |
ctcgaagatcatttgaagcatagagtgtttgaaatcatgatatggattatcagaatccttttcaacgaccacagtgtttgatagtgggctatgcttgtgt |
18837808 |
T |
|
| Q |
105 |
gcagagtagttgtttgttgtgctaacatccgagaacgttgttgtggagaaatcatcgctatcatcgatgctacaaacggcgccatatccttcacctgaag |
204 |
Q |
| |
|
| ||||||||| | ||| || | | || ||||| || || ||||||||||| ||||| | ||||| ||||||| |||| || | || ||||||| ||| |
|
|
| T |
18837809 |
ggagagtagttttgtgtagtttcagcttcagagaaagtggtggtggagaaatcgtcgctgtgatcgacgctacaaccggcaccctttcgttcacctaaag |
18837908 |
T |
|
| Q |
205 |
ttgt |
208 |
Q |
| |
|
|||| |
|
|
| T |
18837909 |
ttgt |
18837912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 42945807 - 42945882
Alignment:
| Q |
1 |
cattctcgaagatcatttgaagcatagaatgtttgaaatcatgatacggatcctcagaatccttctctaccgccac |
76 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||||||| |||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
42945807 |
cattctccaatatcatttgaagcatggaatgcctgaaatcaagataaggatcttcagaatctttctccaccgccac |
42945882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University