View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_low_2 (Length: 500)
Name: NF15937_low_2
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 318
Target Start/End: Original strand, 30352191 - 30352494
Alignment:
| Q |
18 |
gaacaattgaaagtagtggatgagatcaaaaatgcgtcgtgaaggtggggtttgagttggttgaatatgccccattttttgttttatgaatggtcttgga |
117 |
Q |
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| T |
30352191 |
gaacatttgaaagtagtggatgagatcaaaaaggcgtcgtgaaggtggggtttgagtcggttgaatatgccccattttttgttttatgaatggtcttgga |
30352290 |
T |
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| Q |
118 |
gtccttgtcgatgtattggggagatgaatcattgttttctagaggtggaataagaagttttatcttaggcggcctcctggtggaggtcttgttgtgnnnn |
217 |
Q |
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| T |
30352291 |
gtccttgtcgatgtattggggagatgaatcattgttttctagaggtggaataagaagttttatctcaggcggcctcctggtggaggtcttgttgtg--tt |
30352388 |
T |
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| Q |
218 |
nnnnnnngtggaagtgtgacaagcttttgat-----gtttgtagacttgtaagtctgtgttagcttttgggcgaggatgtttttcgtgatctgcttggtt |
312 |
Q |
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| T |
30352389 |
tttttttgtggaagtgtgacaagcttttgatgttgagtttgtagacttgtaagtctgggttagcttttgggcgaggatgtttttcgtgttctgcttggtt |
30352488 |
T |
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| Q |
313 |
tcctcg |
318 |
Q |
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|||||| |
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| T |
30352489 |
tcctcg |
30352494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 332 - 486
Target Start/End: Original strand, 30352519 - 30352674
Alignment:
| Q |
332 |
gggagttgttgtgtggtgcgggaggttttgcccattattgtatttttgggtgttttgtttttgctaggaaggatattgcattgatttgtttagccccgat |
431 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||||| |||||||||||| ||| |
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| T |
30352519 |
gggagttgttgtgtggtgcaggaggttttgcccattattgtattcttaggcgttttgtttttgttaggaaggatattgcattggtttgtttagccctgat |
30352618 |
T |
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| Q |
432 |
gtagta-nnnnnnncctttgatggttttggaaaatatttgtgacacccaaaatgtg |
486 |
Q |
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| T |
30352619 |
gtagtattttttttcctttgatggttttggaaaatatttgtgacacccaaaatgtg |
30352674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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