View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_low_20 (Length: 306)
Name: NF15937_low_20
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 282
Target Start/End: Original strand, 1808341 - 1808598
Alignment:
| Q |
7 |
atgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttcattggttggatcaagtgctgctcttggatttttggttggaatgattgttt |
106 |
Q |
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| T |
1808341 |
atgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttcattggttggatcaagtgctgctcttggatttttggttggaatgattgttt |
1808440 |
T |
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| Q |
107 |
atgtgttacttaagctaaggaattggagtaatgataaaccactttctaccatttggaaccagaaaagtccaaactaaatttgaagaaagagagtttattt |
206 |
Q |
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| T |
1808441 |
atgtgttacttaagctaaggaattggagtaatgataaaccactttctaccatttggaaccagaaaagtccaaactaaatttg----aagagagtttattt |
1808536 |
T |
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| Q |
207 |
atgtgtaaagatttttagtgcaaatgagttagtgtgtatggttttcataatatgttgattttctgtgaggtttgag |
282 |
Q |
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| T |
1808537 |
atgtgtaaagattt--------------ttagtgtgtatggttttcataatatgttgattttctgtgaggtttgag |
1808598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 147
Target Start/End: Original strand, 1875945 - 1876085
Alignment:
| Q |
7 |
atgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttcattggttggatcaagtgctgctcttggatttttggttggaatgattgttt |
106 |
Q |
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| T |
1875945 |
atgaatagcaaagaagattcctttgtggcacttatttgcactgctgtttcattggtgggatcaagtgcagcactaggatttttggttggaatgattgtgt |
1876044 |
T |
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| Q |
107 |
atgtgttacttaagctaaggaattggagtaatgataaacca |
147 |
Q |
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| T |
1876045 |
atttgcttcttaagctaaggaatttgacaaaagataaacca |
1876085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 192
Target Start/End: Complemental strand, 25797871 - 25797686
Alignment:
| Q |
7 |
atgaatagtaaagaagattcttttgtggcacttatttgcactgctgtttcattggttggatcaagtgctgctcttggatttttggttggaatgattgttt |
106 |
Q |
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|||||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||||||||| ||| | |||||||||| |||||||||||||||| |
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| T |
25797871 |
atgaatagcaaagaagatttctttgtggctcttatttccactgctgtttcaatggttggatcaaatgcatcatttggatttttagttggaatgattgttt |
25797772 |
T |
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| Q |
107 |
atgtgttacttaagctaaggaattggagtaatgataaaccactttctaccatttggaaccagaaaagtccaaactaaatttgaaga |
192 |
Q |
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| T |
25797771 |
atataatatttaagctaaggagttccacaaaggatgaaccattttctaccatttggaatcagaaaagcctcatctaaatttgaaga |
25797686 |
T |
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