View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_low_3 (Length: 486)
Name: NF15937_low_3
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Complemental strand, 3081632 - 3081166
Alignment:
| Q |
15 |
ggagagtggggggaagcaagctttgaaagtttcaaccannnnnnnaatgtttaatgatagatgatttatcgaccaaatttcattattgaagcacatcttg |
114 |
Q |
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| T |
3081632 |
ggagagtggggggaagcaagctttgaaagtttcaaccattttcttaatgtttaatgatagatgatttatcgaccaaattttattattgaagcacatcttg |
3081533 |
T |
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| Q |
115 |
tttcggtggcgacatgcccaccaaattgtagccgcgaaaaataaaggattaggaatgttatcgaaaaacctaaagtcagacaaagtta-----------g |
203 |
Q |
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| T |
3081532 |
tttcggtggcgacatgcccaccaaattgtagccgcgaaaaataaaggattaggaatgttatcgaaaaacctaaagtcagacaaagttaaaccaaagttag |
3081433 |
T |
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| Q |
204 |
ttaaatcatttgcacattggttatctttcctataaatatgtgtaaccatgaagttcatgttcttagtaacaattagagcattactccatatgtttctcag |
303 |
Q |
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| T |
3081432 |
ttaaatcatttgcacattggttatctttcctataaatatgtgtaaccatgaagttcatgttcttagtaacaattagagcattactccatatgtttctcag |
3081333 |
T |
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| Q |
304 |
actacaaggactcatataatctttcttgaaagttgacaccaataattgggaatctatttcaatccataagttgtttcaatgtctttcttttgctatttct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3081332 |
actacaaggactcatataatctttcttgaaagttgacaccaataattgggaatctatttcaatccataagttgtttcaatgtctttcttttgctatttct |
3081233 |
T |
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| Q |
404 |
atggctcttaatgcaccaaccacttcagcatggaatgggtttccatcaagtaacttctcggcaaagc |
470 |
Q |
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| T |
3081232 |
atggctcttaatgcaccaaccacttcagcatggaatgggtttccatcaagtaacttctcggcaaagc |
3081166 |
T |
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