View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15937_low_4 (Length: 485)

Name: NF15937_low_4
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15937_low_4
NF15937_low_4
[»] chr6 (4 HSPs)
chr6 (1-470)||(10501901-10502370)
chr6 (71-149)||(31934715-31934793)
chr6 (83-135)||(6982840-6982892)
chr6 (89-138)||(28867799-28867848)
[»] chr2 (9 HSPs)
chr2 (11-402)||(30426062-30426460)
chr2 (41-369)||(32229950-32230278)
chr2 (75-134)||(21949901-21949960)
chr2 (75-120)||(41411526-41411571)
chr2 (75-134)||(9446973-9447032)
chr2 (75-138)||(14555889-14555952)
chr2 (75-134)||(31320254-31320313)
chr2 (75-138)||(13698134-13698197)
chr2 (75-132)||(40275144-40275201)
[»] chr8 (4 HSPs)
chr8 (71-357)||(4922557-4922843)
chr8 (75-135)||(6596522-6596582)
chr8 (75-138)||(40715949-40716012)
chr8 (78-138)||(19168180-19168240)
[»] chr1 (6 HSPs)
chr1 (71-363)||(9057704-9057993)
chr1 (71-363)||(16140376-16140665)
chr1 (71-148)||(42080691-42080768)
chr1 (71-144)||(18187915-18187988)
chr1 (71-158)||(40632829-40632916)
chr1 (75-132)||(43403898-43403955)
[»] chr4 (7 HSPs)
chr4 (7-245)||(16595030-16595268)
chr4 (213-368)||(24977975-24978132)
chr4 (37-134)||(49212140-49212239)
chr4 (84-175)||(24977835-24977922)
chr4 (75-138)||(2048987-2049050)
chr4 (75-138)||(39735816-39735879)
chr4 (75-138)||(3958949-3959012)
[»] chr5 (5 HSPs)
chr5 (42-188)||(27584649-27584795)
chr5 (75-134)||(31610042-31610101)
chr5 (75-138)||(33417434-33417497)
chr5 (327-373)||(15187935-15187981)
chr5 (75-131)||(18979870-18979926)
[»] chr7 (11 HSPs)
chr7 (42-202)||(32033732-32033892)
chr7 (42-202)||(32025213-32025372)
chr7 (315-442)||(32025039-32025166)
chr7 (315-442)||(32033558-32033685)
chr7 (71-144)||(25862609-25862682)
chr7 (71-144)||(4277317-4277390)
chr7 (75-138)||(38836142-38836205)
chr7 (75-138)||(49094549-49094612)
chr7 (75-137)||(8308214-8308276)
chr7 (75-131)||(8425057-8425113)
chr7 (78-138)||(30559369-30559429)
[»] chr3 (3 HSPs)
chr3 (75-138)||(11536254-11536317)
chr3 (75-138)||(3830683-3830746)
chr3 (75-135)||(3792503-3792563)
[»] scaffold0060 (1 HSPs)
scaffold0060 (75-138)||(18925-18987)
[»] scaffold0141 (1 HSPs)
scaffold0141 (75-137)||(16537-16599)


Alignment Details
Target: chr6 (Bit Score: 410; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 10501901 - 10502370
Alignment:
Q  1 atatacgcaaagaagcaaatcaactagctagaataagctgccaaacaacaagctactagcacctattaagaaacatatttgggattgctttttattacac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10501901 atatacgcaaagaagcaaatcaactagctagaataagctgccaaaaaactagctactagcacctattaagaaacatatttgggattgctttttattacac 10502000  T
Q  101 cctttttgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgttggactt 200  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  10502001 cctttttggaacgagtttggatgtgcttactacttgtgatgccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgctggactt 10502100  T
Q  201 agtttgatgaagagcatctcattgtgcctccaagaacttcaaagccacagggtgcatattcatcttttcactgtcactgtcaaggtccacagtgtcatct 300  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  10502101 agtttgatgaagagcatctagttgtgcctccaagaacttcaaagccacagggtgcatattcatcttttcactgtcagtgtcagggtccacagtgtcatct 10502200  T
Q  301 gttgtgtggtcagagtccaccacatccccccaaaatttgccaagaatttggacacttttcttggctgcagcagtaacatttttagagccaccaataacat 400  Q
    |||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10502201 gttgtgtggttagagtccaccacatcccccgaaaatttgctaagaattttgacacttttcttggctgcagcagtaacatttttagagccaccaataacat 10502300  T
Q  401 gagtcttacctttgtctaggcctaactcttcataaattgtgactggaatggccatttttataggaaaaag 470  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10502301 gagtcttacctttgtctgggcctaactcttcataaattgtgactggaatggccatttttataggagaaag 10502370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 31934793 - 31934715
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgccatcaga 149  Q
    ||||||||||| |||||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||||| ||||    
T  31934793 aaacatatttgagattgcttttaattacaccctttttagatcgagtttggatgttctcactacttgtgatgccaccaga 31934715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 6982892 - 6982840
Alignment:
Q  83 gattgctttttattacaccctttttgaaacgagtttggatgtgctcactactt 135  Q
    |||||||||| ||||||||||||||  |||||||||| |||||||||||||||    
T  6982892 gattgcttttgattacacccttttttgaacgagtttgtatgtgctcactactt 6982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 28867799 - 28867848
Alignment:
Q  89 tttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||| |||||| ||||||| ||||||||||| |||| |||||||||||||    
T  28867799 ttttgattacaaccttttttaaacgagtttgtatgtactcactacttgtg 28867848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 402
Target Start/End: Original strand, 30426062 - 30426460
Alignment:
Q  11 agaagcaaatcaactagctagaataagctgccaaa-------caacaagctactagcacctattaagaaacatatttgggattgctttttattacaccct 103  Q
    ||||||||||||||| |||||| ||||||||||||       |||| ||||||| |||| ||||||||| ||||||| |||||| |||||||||||||||    
T  30426062 agaagcaaatcaactggctagactaagctgccaaagtccaaacaactagctacttgcacatattaagaagcatattttggattgttttttattacaccct 30426161  T
Q  104 ttttgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgttggacttagt 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||||| |||||||||     
T  30426162 ttttggaacgagtttggatgtgctcactacttgtgatgccatccgagcctttgcctcttgcagagctgctactctttcttgatatcctgctggacttagg 30426261  T
Q  204 ttgatgaagagcatctcattgtgcctccaagaacttcaaagccacagggtgcatattcatcttttcactgtcactgtcaaggtccacagtgtcatctgtt 303  Q
    ||  |||| |||||||  |||||||  ||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||| |||| |||||||     
T  30426262 ttagtgaatagcatctggttgtgccatcaagaacttcagagccacagggtgcatattcatcatttcagtgtcagtgtcaaggtccatagtgccatctgtc 30426361  T
Q  304 gtgtggtcagagtccaccacatccccccaaaatttgccaagaatttggacacttttcttggctgcagcagtaacatttttagagccaccaataacatga 402  Q
    ||||||||||| |||||||| |||| ||||||||||| |||||||||| |||||||||||||| ||| || |||||||||||||||||||||| |||||    
T  30426362 gtgtggtcagaatccaccacgtccctccaaaatttgctaagaatttgggcacttttcttggctacagtagaaacatttttagagccaccaatagcatga 30426460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 41 - 369
Target Start/End: Original strand, 32229950 - 32230278
Alignment:
Q  41 ccaaacaacaagctactagcacctattaagaaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgat 140  Q
    ||||||||| |||||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32229950 ccaaacaactagctactagcacatattaagaagcatattttggattgttttttattacaccctttttggaacgagtttggatgtgctcactacttgtgat 32230049  T
Q  141 gccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgttggacttagtttgatgaagagcatctcattgtgcctccaagaacttc 240  Q
    | |||| ||| |||||||||||||| |||||||||||||||||||  ||||| ||||||||| ||| |||| ||||||  |||||||| |||||||||||    
T  32230050 gtcatccgagcctttgcctcttgcaaagctgctactctttcttgatatcctgctggacttagattggtgaatagcatccgattgtgccaccaagaacttc 32230149  T
Q  241 aaagccacagggtgcatattcatcttttcactgtcactgtcaaggtccacagtgtcatctgttgtgtggtcagagtccaccacatccccccaaaatttgc 340  Q
    | |||||||||||||||||||||| ||||| ||||| |||||||||||| |||| ||||||| ||||||||||| |||||||||||||||||||||||||    
T  32230150 agagccacagggtgcatattcatcatttcagtgtcagtgtcaaggtccatagtgccatctgtcgtgtggtcagaatccaccacatccccccaaaatttgc 32230249  T
Q  341 caagaatttggacacttttcttggctgca 369  Q
     |||||||||| |||||||||||||||||    
T  32230250 taagaatttgggcacttttcttggctgca 32230278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 21949901 - 21949960
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactact 134  Q
    |||||||||||||||||| ||||||||||||||  |||||||||| ||||||||||||||    
T  21949901 atatttgggattgcttttgattacaccctttttagaacgagtttgtatgtgctcactact 21949960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 41411526 - 41411571
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttgg 120  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||    
T  41411526 atatttgggattgcttttgattacaccctttttggaacgagtttgg 41411571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 9447032 - 9446973
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactact 134  Q
    |||||||||||||||||| || |||||||||||| |||| |||||  |||||||||||||    
T  9447032 atatttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactact 9446973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 14555952 - 14555889
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||||||||||||||| || |||||||||||| |||||||||| || || ||||| ||||||    
T  14555952 atatttgggattgcttttgatcacaccctttttggaacgagtttgtatatgatcactgcttgtg 14555889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 31320313 - 31320254
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactact 134  Q
    |||||||||||||||||| || |||||||||||| |||| ||||| ||| ||||||||||    
T  31320313 atatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactact 31320254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 13698197 - 13698134
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||| ||||||||||| || ||||||||  || ||| |||||| ||||||||||||||||||    
T  13698197 atattttggattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtg 13698134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 40275201 - 40275144
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcacta 132  Q
    |||||||||||||||||| || |||||||||||  |||||||||| || || ||||||    
T  40275201 atatttgggattgcttttgatgacaccctttttagaacgagtttgtatttgttcacta 40275144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 71 - 357
Target Start/End: Complemental strand, 4922843 - 4922557
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcctcttgcagagct 170  Q
    |||||||||||||| |||||||||| | |||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||| ||||||||||    
T  4922843 aaacatatttgggaatgctttttatgagaccctttttggaacgagtttgaatgtgctcactacttatgatgccatcagagcctttgcctattgcagagct 4922744  T
Q  171 gctactctttcttgacttcctgttggacttagtttgatgaagagcatctcattgtgcctccaagaacttcaaagccacagggtgcatattcatcttttca 270  Q
    |||||||||||||||||||||| ||||||||| ||| ||| || |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4922743 gctactctttcttgacttcctgctggacttaggttggtgatgaacatctggttgtgcctccaagtacttcaaagccacagggtgcatattcatcttttca 4922644  T
Q  271 ctgtcactgtcaaggtccacagtgtcatctgttgtgtggtcagagtccaccacatccccccaaaatttgccaagaatttggacactt 357  Q
    | |||| ||||| | |||| |||||||||| ||||||||||||||||| ||||||| ||||||||||| | |||||||| |||||||    
T  4922643 ccgtcagtgtcatgatccatagtgtcatctattgtgtggtcagagtcctccacatcgccccaaaatttactaagaatttagacactt 4922557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 6596582 - 6596522
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactactt 135  Q
    |||||| ||||||||||| ||||||||||||||  || |||||||||||||||||||||||    
T  6596582 atatttaggattgcttttgattacaccctttttagaatgagtttggatgtgctcactactt 6596522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 40716012 - 40715949
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||| ||||||||||| ||  || | ||||||||||||||||| ||||||||||||||||||    
T  40716012 atatttaggattgcttttgatagcatcttttttgaaacgagtttgtatgtgctcactacttgtg 40715949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 19168240 - 19168180
Alignment:
Q  78 tttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    ||||| ||||||||| || |||||||||||  |||||||||| ||||||||| || |||||    
T  19168240 tttggaattgcttttgatgacaccctttttagaacgagtttgtatgtgctcaataattgtg 19168180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 71 - 363
Target Start/End: Complemental strand, 9057993 - 9057704
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcctcttgcagagct 170  Q
    ||||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||    
T  9057993 aaacatatttgagattgcttttgattacaccctttttgagacaagtttggatgtgctcactacttgtaatgccatcagagcctttgcctcttgcggagct 9057894  T
Q  171 gctactctttcttgacttcctgttggacttagtttgatgaagagcatctcattgtgcctccaagaacttcaaagccacagggtgcatattcatcttttca 270  Q
    ||||||||||| |||||||||||||||||||| ||| ||| ||||||||  ||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  9057893 gctactctttcctgacttcctgttggacttaggttggtgatgagcatctggttgagcctccaaatacttcaaagccacagggtgcatattcatcttttca 9057794  T
Q  271 ctgtcactgtcaaggtccacagtgtcatctgttgtgtggtcagagtccaccacatccccccaaaatttgccaagaatttggacacttttcttg 363  Q
     ||||| ||||| | |||| | || ||||||||||   |||||||||||||||||  || ||| ||||   ||||||||||||||||||||||    
T  9057793 ttgtcagtgtcaggatccataatgccatctgttgt---gtcagagtccaccacataacctcaacatttattaagaatttggacacttttcttg 9057704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 71 - 363
Target Start/End: Original strand, 16140376 - 16140665
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcctcttgcagagct 170  Q
    |||||||||| || |||||||| |||||| ||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  16140376 aaacatatttagggttgcttttgattacatcctttttaagacgagtttggatttgctcactacttgtgatgccatcagagcctttgcctcttgcagagct 16140475  T
Q  171 gctactctttcttgacttcctgttggacttagtttgatgaagagcatctcattgtgcctccaagaacttcaaagccacagggtgcatattcatcttttca 270  Q
    ||||||||||||||||||| || ||||||| | ||| ||| || |||||  ||||||||||||  ||| |||||||| |||||||||||||||||||||     
T  16140476 gctactctttcttgacttcttgctggactttggttggtgatgatcatctggttgtgcctccaaatactgcaaagccatagggtgcatattcatcttttct 16140575  T
Q  271 ctgtcactgtcaaggtccacagtgtcatctgttgtgtggtcagagtccaccacatccccccaaaatttgccaagaatttggacacttttcttg 363  Q
     ||||  ||||| | |||| |||| ||| ||| ||   |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  16140576 ttgtcggtgtcaggatccatagtggcatttgtagt---gtcagagtccaccacatcaccccaaaatttactaagaatttggacacttttcttg 16140665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 42080691 - 42080768
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgccatcag 148  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  42080691 aaacatatttgggattgcttttgattacaccctttttggaacgagtttggatgtgctcactacttgtgacgccatcag 42080768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 18187988 - 18187915
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgcca 144  Q
    |||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  18187988 aaacatatttgggattgctttaaattacaccctctttgaatcgagtttggatgtgctcactacttgtgatgcca 18187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 40632916 - 40632829
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcc 158  Q
    |||||||||||||||||||||| ||||| ||||||||  || |||||||||| |||||||||| |||||||||||||||  |||||||    
T  40632916 aaacatatttgggattgcttttgattacgccctttttagaatgagtttggatatgctcactacctgtgatgccatcagaacctttgcc 40632829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 43403898 - 43403955
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcacta 132  Q
    |||||||||||||||||| || |||||||||||  |||||||||| || || ||||||    
T  43403898 atatttgggattgcttttgatgacaccctttttagaacgagtttgtatttgttcacta 43403955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 147; Significance: 3e-77; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 7 - 245
Target Start/End: Original strand, 16595030 - 16595268
Alignment:
Q  7 gcaaagaagcaaatcaactagctagaataagctgccaaacaacaagctactagcacctattaagaaacatatttgggattgctttttattacaccctttt 106  Q
    ||||||||||||| ||||| |||||| || ||||||||||||| |||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||    
T  16595030 gcaaagaagcaaaacaactggctagactaggctgccaaacaactagctacaagcacatcttaagaaacatatttgggattgctttttataacaccctttt 16595129  T
Q  107 tgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgttggacttagtttg 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||||  | ||||||| ||     
T  16595130 tgaaacgagtttggatgtactcactacttgtgatgccatcagagcatttgcttcttgcagagctgctactctttcttgacttcctagtcgacttagattt 16595229  T
Q  207 atgaagagcatctcattgtgcctccaagaacttcaaagc 245  Q
     |||| |||||||  ||||||||||| ||||||||||||    
T  16595230 gtgaaaagcatctggttgtgcctccaggaacttcaaagc 16595268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 213 - 368
Target Start/End: Original strand, 24977975 - 24978132
Alignment:
Q  213 agcatctcattgtgcctccaagaacttcaaagccacagggtgcatattcatcttttcactgt--cactgtcaaggtccacagtgtcatctgttgtgtggt 310  Q
    ||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| |   | ||||| | |||| |||| |||||||||||||||    
T  24977975 agcatctgattgtgcctccaagtacttcaaaaccacagggtgcatattcatcttttcactctaatagtgtcaggatccaaagtgccatctgttgtgtggt 24978074  T
Q  311 cagagtccaccacatccccccaaaatttgccaagaatttggacacttttcttggctgc 368  Q
    || ||||||||||||| ||||||||||| | |||||| |||||| |||||||| ||||    
T  24978075 caaagtccaccacatctccccaaaatttactaagaatatggacaattttcttgcctgc 24978132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 49212239 - 49212140
Alignment:
Q  37 gctgccaaacaacaagctactagcacctattaagaaacatat--ttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactact 134  Q
    ||||||||||||| |||||| ||||| | |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| | |||||||||    
T  49212239 gctgccaaacaactagctacaagcacatcttaagaaacatatagttgggattgctttttataacaccctttttgaaacgagtttggatatactcactact 49212140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 24977835 - 24977922
Alignment:
Q  84 attgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgccatcagagtctttgcctcttgcagagctgctac 175  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||    
T  24977835 attgcttttgattacactctttttggaacgagtttggatgtgct----acttgtgatgccatcagagcctttgcctcttgcagagctgctac 24977922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 2049050 - 2048987
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||||||||||||||| || |||||||||||| |||||||||| || |||||||||||||||    
T  2049050 atatttgggattgcttttgataacaccctttttggaacgagtttgtatatgctcactacttgtg 2048987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 39735879 - 39735816
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||| ||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||    
T  39735879 atattttggattgcttttgattacacccttcttggaacgagtttgtatgtgctcactacttgtg 39735816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 3958949 - 3959012
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||||||||||||||| || |||||||||||  |||||||||| |||||||||||| |||||    
T  3958949 atatttgggattgcttttgatgacaccctttttagaacgagtttgtatgtgctcactatttgtg 3959012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 7e-44; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 27584795 - 27584649
Alignment:
Q  42 caaacaacaagctactagcacctattaagaaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatg 141  Q
    |||||||| |||||||| ||| ||||||||| ||||||| ||||||  |||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  27584795 caaacaactagctactaacacatattaagaagcatatttaggattgtgttttataacaccctttttggaacgagtttggatgtgctcactacttgtgatg 27584696  T
Q  142 ccatcagagtctttgcctcttgcagagctgctactctttcttgactt 188  Q
    ||||| |||  ||||||||||| ||||||||||||||||| ||||||    
T  27584695 ccatccgagcatttgcctcttgtagagctgctactctttcctgactt 27584649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 134
Target Start/End: Complemental strand, 31610101 - 31610042
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactact 134  Q
    |||||||||||||||||| || |||||||||||  |||| ||||| ||||||||||||||    
T  31610101 atatttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactact 31610042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 33417497 - 33417434
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||| ||||| ||||| ||||||||||||||  ||||| |||| ||||||||||||||||||    
T  33417497 atatttaggattacttttgattacaccctttttagaacgaatttgtatgtgctcactacttgtg 33417434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 15187981 - 15187935
Alignment:
Q  327 cccccaaaatttgccaagaatttggacacttttcttggctgcagcag 373  Q
    |||||||||||||| |||||| || |||||||||| |||||||||||    
T  15187981 cccccaaaatttgcaaagaatctgcacacttttctgggctgcagcag 15187935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 18979926 - 18979870
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcact 131  Q
    ||||||||||||| |||| || |||||||||||  |||||||||| ||||| |||||    
T  18979926 atatttgggattggttttgatgacaccctttttagaacgagtttgtatgtgatcact 18979870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 32033892 - 32033732
Alignment:
Q  42 caaacaacaagctactagcacctattaagaaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatg 141  Q
    |||||||| |||||||| ||  ||||||||| ||||||| ||||||  |||||| |||||||||||| ||||||||||||| ||||||||||||||||||    
T  32033892 caaacaactagctactaacaaatattaagaagcatatttaggattgtgttttataacaccctttttggaacgagtttggatatgctcactacttgtgatg 32033793  T
Q  142 ccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgttggacttag 202  Q
    ||||| ||| |||||||||||| ||||||||||||||||| |||||| ||| || ||||||    
T  32033792 ccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttag 32033732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 32025372 - 32025213
Alignment:
Q  42 caaacaacaagctactagcacctattaagaaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatg 141  Q
    |||||||| |||||||| ||  ||||||||| ||||||| ||||||  |||||| ||||| |||||| ||||||||||||||||||||||||||||||||    
T  32025372 caaacaaccagctactaacaaatattaagaagcatatttaggattgtgttttataacacc-tttttggaacgagtttggatgtgctcactacttgtgatg 32025274  T
Q  142 ccatcagagtctttgcctcttgcagagctgctactctttcttgacttcctgttggacttag 202  Q
    ||||| ||| |||||||||||| ||||||||||||||||| |||||| ||| || ||||||    
T  32025273 ccatccgagcctttgcctcttgtagagctgctactctttcctgactttctgctgaacttag 32025213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 32025166 - 32025039
Alignment:
Q  315 gtccaccacatccccccaaaatttgccaagaatttggacacttttcttggctgcagcagtaacatttttagagccaccaataacatgagtcttacctttg 414  Q
    ||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||  ||| ||||||    
T  32025166 gtccaccacatccacccaaagtttgctaagaatttgggcacttttcttggctgcagcagaaacatttttagatccaccaatagcatgaaccttgcctttg 32025067  T
Q  415 tctaggcctaactcttcataaattgtga 442  Q
    ||  | ||||||||||||||| ||||||    
T  32025066 tcaggacctaactcttcataagttgtga 32025039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 315 - 442
Target Start/End: Complemental strand, 32033685 - 32033558
Alignment:
Q  315 gtccaccacatccccccaaaatttgccaagaatttggacacttttcttggctgcagcagtaacatttttagagccaccaataacatgagtcttacctttg 414  Q
    ||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||  ||| ||||||    
T  32033685 gtccaccacatccacccaaagtttgctaagaatttgggcacttttcttggctgcagcagaaacatttttagatccaccaatagcatgaaccttgcctttg 32033586  T
Q  415 tctaggcctaactcttcataaattgtga 442  Q
    ||  | ||||||||||||||| ||||||    
T  32033585 tcaggacctaactcttcataagttgtga 32033558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 25862609 - 25862682
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgcca 144  Q
    |||||||||| ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  25862609 aaacatatttaggattgcttttaattacaccctttttggatcgagtttggatgtgctcactacttgtgatgcca 25862682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 4277390 - 4277317
Alignment:
Q  71 aaacatatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtgatgcca 144  Q
    |||||||||||||||||||||| || |||||||||||| |  || |||||||||||||||||||||||||||||    
T  4277390 aaacatatttgggattgcttttaatgacaccctttttggattgattttggatgtgctcactacttgtgatgcca 4277317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 38836205 - 38836142
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||||||||||||||| || ||||| |||||| |||||||||| || |||||||||||||||    
T  38836205 atatttgggattgcttttgataacaccatttttggaacgagtttgtatatgctcactacttgtg 38836142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 49094549 - 49094612
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||||||||||||||| || ||||| |||||| |||| ||||| ||||||||||||||||||    
T  49094549 atatttgggattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactacttgtg 49094612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 8308214 - 8308276
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgt 137  Q
    |||||||||||| ||||| ||||||  ||||||  |||||||||| |||||||||||||||||    
T  8308214 atatttgggattacttttgattacattctttttagaacgagtttgtatgtgctcactacttgt 8308276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 8425113 - 8425057
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcact 131  Q
    |||||| ||||||||||| || |||||||| ||| |||||||||| |||||||||||    
T  8425113 atattttggattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Original strand, 30559369 - 30559429
Alignment:
Q  78 tttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    ||||||||||||||| || |||||||||||| ||| |||||  |||||||||| |||||||    
T  30559369 tttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtg 30559429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 11536317 - 11536254
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  11536317 atatttgtgattgttttttattacacccttttttaaacgagtttgtatgtgctcactacttgtg 11536254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 3830683 - 3830746
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||| ||||||||||| || |||| |||  || |||||||||| ||||||||||||||||||    
T  3830683 atattttggattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtg 3830746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 135
Target Start/End: Original strand, 3792503 - 3792563
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactactt 135  Q
    |||||| ||||||||||| || ||||| ||  || |||||||||| |||||||||||||||    
T  3792503 atattttggattgcttttgatcacacctttcatggaacgagtttgaatgtgctcactactt 3792563  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 18987 - 18925
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgtg 138  Q
    |||||||||||||||||| || |||||||||| | |||||||||| ||||||||| || |||||    
T  18987 atatttgggattgcttttgatgacacccttttag-aacgagtttgtatgtgctcaataattgtg 18925  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 16537 - 16599
Alignment:
Q  75 atatttgggattgctttttattacaccctttttgaaacgagtttggatgtgctcactacttgt 137  Q
    |||||| ||||||||||| || |||||||| ||| |||||||||  ||||||||||| |||||    
T  16537 atattttggattgcttttgatcacacccttcttggaacgagtttatatgtgctcactccttgt 16599  T

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