View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15937_low_8 (Length: 378)
Name: NF15937_low_8
Description: NF15937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15937_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 16 - 367
Target Start/End: Original strand, 5543030 - 5543381
Alignment:
| Q |
16 |
caaattgaagtgattaagtgtaaattaacatgaaggaaataaagtaatcaagaaataaagtatactgcaaattaaacagcaaagcaatgaacgatggaaa |
115 |
Q |
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| T |
5543030 |
caaattgaagtgattaagtgtaaattaacatgaaggaaataaagtaatcaagaaataaagtatactgcaaattaaacagcaaagcaatgaacgatggaaa |
5543129 |
T |
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| Q |
116 |
gtacaatataaattgtgtgcgacacaaagtttctggactttctatggtaaagaacagagaaaataaacaagcaaatattttgttcaagtcaatgacctgt |
215 |
Q |
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| T |
5543130 |
gtacaatataaattgtgtgcgacacaaagtttctggactttctatggtaaagaacagagaaaataaacaagcaaatattttgttcaagtcaatgacctgt |
5543229 |
T |
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| Q |
216 |
ttataaaattaaaccaccttttatgttacacaacccgaccataattgtggtcacatttcagcgcgattctctataatatcaaagattgtgacgtgacagc |
315 |
Q |
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| T |
5543230 |
ttataaaattaaaccaccttttatgttacacaacccgaccataattgtggtcacatttcagcgcgattctctataatatcaaagattgtgacgtgacagc |
5543329 |
T |
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| Q |
316 |
acatgttcctgcaactattaccgcaatcattatatgaaattaaaccaccttt |
367 |
Q |
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| T |
5543330 |
acatgttcctgcaactattaccgcaatcattatatgaaattaaaccaccttt |
5543381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 221 - 348
Target Start/End: Original strand, 5543366 - 5543492
Alignment:
| Q |
221 |
aaattaaaccaccttttatgttacacaacccgaccataattgtggtcacatttcagcgcgattctctataatatcaaagattgtgacgtgacagcacatg |
320 |
Q |
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| T |
5543366 |
aaattaaaccaccttttatgctacacaacccgaccgtaattgtggtcacatttcagcgcgattctttat-atatcaaagattgtgacgtgactgtacatg |
5543464 |
T |
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| Q |
321 |
ttcctgcaactattaccgcaatcattat |
348 |
Q |
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| T |
5543465 |
ttactgcaactattaccgcgatcattat |
5543492 |
T |
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Back To:
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