View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15938_high_1 (Length: 657)
Name: NF15938_high_1
Description: NF15938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15938_high_1 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 589; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 16 - 657
Target Start/End: Complemental strand, 1990494 - 1989853
Alignment:
| Q |
16 |
gaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagcaatctttgagaaaaagaatatgaatattctttattgatcaaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1990494 |
gaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagctatctttgagaaagagaatatgaatattctttattgatcaaaa |
1990395 |
T |
|
| Q |
116 |
gttgtttatgattacgcgatgataattgatcaaatccctctaacttatttgattcagttcgttacaatgagaataactgtttgttaggactgttatttta |
215 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1990394 |
gttggttatgattacgtgatgataattgatcaaatccctctaacttatttgattcagttcgttacaatgagaataactgtttgttaggactgttatttta |
1990295 |
T |
|
| Q |
216 |
taggttatacacagctaaagtaggctgtattgatatatactacaatacaacatagtttcacgaataaccatgaatgaaattggagactgcacaatactcg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1990294 |
taggttatacacagctaaagtaggctgtattgatatatactacaatacaacatagtttcacgaataaccatgaatgaaagtggagactgcacaatactcg |
1990195 |
T |
|
| Q |
316 |
taatgaatgtacctggcttgccgcagcagtatagatcttatcttcaaacctttgagcaagcttccaaagttcaagtaatccctcagaaccagaaatagga |
415 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1990194 |
taatgaatgtacctggcttgccgcatcagtatagatcttatcttcaaacctttgagcaagcttccgaagttcaagtaatccctcagaaccagaaatagga |
1990095 |
T |
|
| Q |
416 |
tgatattttcttaacgtgtccattctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatgttcagacaatggcacaaacacaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1990094 |
tgatattttcttaacgtgtccattctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatgttcagacaatggcacaaacacaa |
1989995 |
T |
|
| Q |
516 |
caagattagcggtaaaaagataatctttgtcagataattatttattcccacacctgcagaagcnnnnnnntagacattactgtttagaggacagatcaca |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1989994 |
caagattagcggtaaaaagataatctttgtcagataattatttattcccacacctgcagaagcaaaaaaatagacattactgtttagaggacagatcaca |
1989895 |
T |
|
| Q |
616 |
gaaccaaggatcatcatccatcaacaacaacaacaaccacca |
657 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1989894 |
gaaccaaggatcatcattcatcaacaacaacaacaaccacca |
1989853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 576
Target Start/End: Complemental strand, 2022068 - 2021492
Alignment:
| Q |
16 |
gaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagcaatctttgagaaaaagaatatgaatattctttattgatcaaaa |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2022068 |
gaaggaacaccagtatcgagttaaataatcgatgttcaatacagtagaaacctaagctatctttgagaaagagaatatgaatattctttattgatcaaaa |
2021969 |
T |
|
| Q |
116 |
gttgtttatgattacgcgatgataatt------------gatcaaatccctctaacttatttgattcagttcgttacaatgagaataactgtttgttagg |
203 |
Q |
| |
|
|||| ||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| |
|
|
| T |
2021968 |
gttggttatgattacgtgatgataattagtatctataaaggtcaaatccctctaacttatttgattcagttagttacaatgagaacaactgtttcttagg |
2021869 |
T |
|
| Q |
204 |
actgttattttataggttatacacagctaaagtaggctgtattgatatatactacaatacaacatagtttcacgaataaccatgaatgaaattggagact |
303 |
Q |
| |
|
|||| |||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||||| ||||| || |||| || ||||||| ||||| | |
|
|
| T |
2021868 |
actgctattctataggttataggcagcaacagtaggctgtattgatatatactacaatacaacataatttcatgagtaacaatcaatgaaagtggaggca |
2021769 |
T |
|
| Q |
304 |
gcacaatactcgtaatgaatgtacctggcttgccgcagcagtatagatcttatcttcaaacctttgagcaagcttccaaagttcaagtaatccctcagaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||| ||| || ||||||||||||||||||||||||| |||| |||||||| |||||||||| || |
|
|
| T |
2021768 |
gcacaatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaaatcttatcttcaaacctttgagcaatcttctgaagttcaattaatccctcataa |
2021669 |
T |
|
| Q |
404 |
ccagaaataggatgatattttcttaacgtgtccattctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatgttcagacaatg |
503 |
Q |
| |
|
| ||||| |||| || |||||||||||||||||||||||| || |||| |||||| |||||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
2021668 |
ctagaaacaggaagacgttttcttaacgtgtccattctacagagaaaaatcaattatttcaaatttagataatgcaagtgacagaaatgtacagacaatg |
2021569 |
T |
|
| Q |
504 |
gcacaaacac--aacaagattagcggtaaaaagataatc--tttgtcagataattatttattcccacacctgcagaa |
576 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| ||| ||||||||| |||| ||||| ||||||||||| |
|
|
| T |
2021568 |
gcacaaacactaaacaagattagcggtaaatagataatcagtttttcagataataatttcttccctcacctgcagaa |
2021492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 240 - 492
Target Start/End: Complemental strand, 2036022 - 2035769
Alignment:
| Q |
240 |
ctgtattgatatatactacaatacaacatagtttcacgaataac--catgaatgaaattggagactgcacaatactcgtaatgaatgtacctggcttgcc |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2036022 |
ctgtattgatatatactacaatacaacatagcttcatgagtaacaccatgaatgaaagtggagactgcacaatactcgtaatgaatgtacctggcttgtc |
2035923 |
T |
|
| Q |
338 |
gcagcagtatagatcttatcttcaaacctttgagcaagcttccaaagttcaagtaatccctcagaaccagaaataggatgatattttcttaacgtgtcca |
437 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
2035922 |
gcagcagtataaatcttatcttcaaacctttgagcaatcttccgaagttcaagcaatccctcagaaccagaaacgggaagatgttttcttaatgtgtcca |
2035823 |
T |
|
| Q |
438 |
ttctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatg |
492 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
2035822 |
ttctacaaaggaaaagcaattatttcaaa-ttagatagtgcaagtgacagagatg |
2035769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 2036189 - 2036019
Alignment:
| Q |
16 |
gaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagcaatctttgagaaaaagaatatgaatattctttattgatcaaaa |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
2036189 |
gaaggaacaccagtatcgagttaaataatcgatgttcaatatagtagaaacctaagcta---------aagagaatatgaatattctttattgatcaaaa |
2036099 |
T |
|
| Q |
116 |
gttgtttatgattacgcgatgataattgatcaaatccctctaacttatttgattcagttcgttacaatgagaataactgt |
195 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2036098 |
gttggttatgattacgtgatggtaattgatcaaatccctctaacttatttgattcagttcgttacaatgagaataactgt |
2036019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 205 - 498
Target Start/End: Complemental strand, 2019233 - 2018942
Alignment:
| Q |
205 |
ctgttattttataggttatacacagctaaagtaggctgtattgatatatactacaatacaacatagtttcacgaataaccatgaatgaaattggagactg |
304 |
Q |
| |
|
|||||||| || ||| |||||||||||| | |||||| |||| | |||||| |||||||||||||| || | ||||||||||| | | ||||| ||| |
|
|
| T |
2019233 |
ctgttattctacaggctatacacagctacaataggctatatt--tctatactgcaatacaacatagtagcatgcgtaaccatgaataagagtggaggctg |
2019136 |
T |
|
| Q |
305 |
cacaatactcgtaatgaatgtacctggcttgccgcagcagtatagatcttatcttcaaacctttgagcaagcttccaaagttcaagtaatccctcagaac |
404 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| | |||||| |||||||||||||||| ||||| | || | |||||||||||||||||| |||| |
|
|
| T |
2019135 |
cacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaatccctcggaac |
2019036 |
T |
|
| Q |
405 |
cagaaataggatgatattttcttaacgtgtccattctacaaaggaaaagcaattacttcaaatttagatagtgcaagtgacagagatgttcaga |
498 |
Q |
| |
|
|||||| |||| || | |||||||||||||||||||||| | |||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
2019035 |
cagaaacaggaatatgtcttcttaacgtgtccattctacagaagaaaagcaattatttcaaattgagataatgcaactgacagagatgttcaga |
2018942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 2019460 - 2019392
Alignment:
| Q |
16 |
gaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagcaatctttgagaaa |
85 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| || ||||| | |||||| ||| |||||||||||| |
|
|
| T |
2019460 |
gaaggaacaccagtatcaa-ttaaataatcaatgatccatataattgaaacccaagttatctttgagaaa |
2019392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 48204678 - 48204741
Alignment:
| Q |
16 |
gaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagcaatcttt |
79 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
48204678 |
gaaggaacaccagtatcgagttaaataatcgatgttcaatacagtagaaacctaagctatcttt |
48204741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 2428348 - 2428286
Alignment:
| Q |
17 |
aaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagcaatcttt |
79 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||||| |
|
|
| T |
2428348 |
aaggaacaccagtatcgagttaaataattgatgttcaatacagtagaaacctaagctatcttt |
2428286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 44983033 - 44983096
Alignment:
| Q |
325 |
tacctggcttgccgcagcagtatagatcttatcttcaaacctttgagcaagcttccaaagttca |
388 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
44983033 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccaaagttca |
44983096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 40911269 - 40911206
Alignment:
| Q |
325 |
tacctggcttgccgcagcagtatagatcttatcttcaaacctttgagcaagcttccaaagttca |
388 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||| |||| |||| ||||| ||||||| |
|
|
| T |
40911269 |
tacctggcttgttgcagcagtataaatcttatcttcaaacttttgggcaatcttccgaagttca |
40911206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 325 - 388
Target Start/End: Original strand, 44968718 - 44968781
Alignment:
| Q |
325 |
tacctggcttgccgcagcagtatagatcttatcttcaaacctttgagcaagcttccaaagttca |
388 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||| |||| ||||| ||||||| |
|
|
| T |
44968718 |
tacctggcttgttgcagcagtataaatcttctcttcaaacctttgggcaatcttccgaagttca |
44968781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University